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[181689_at]

Description F54F11.1 /REP_DB=WormBase Gene ID /WP=CE20872 /TR=O45568 /GB=CAB05738.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 31.8
(-1.8)
A 		28
(-2)
A 		131.9
(3)
A 		6.3
(-3)
A 		126
B 7.8
(-3)
A 		118.3
(3)
A 		61.9
(-0.1)
A 		68.6
(0.3)
A 		111
C 33.8
(-3)
A 		76.1
(2.9)
A 		45.5
(-1.4)
A 		76.5
(3)
A 		43
avr 24.5
(-3) 		74.1
(2.4) 		79.8
(3) 		50.5
(-0.2) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 6.4
(-3)
A 		69.6
(2.1)
A 		35
(-0.7)
A 		80.2
(3)
A 		48.4
(0.4)
A 		13.4
(-2.4)
A 		74
B 8.1
(-2.7)
A 		5.2
(-3)
A 		20.7
(-1.6)
A 		21.6
(-1.5)
A 		72.6
(3)
A 		12.4
(-2.4)
A 		67
C 18.1
(-2.4)
A 		65.1
(3)
A 		13.1
(-3)
A 		36.5
(-0.3)
A 		39.1
(0)
A 		38.5
(-0.1)
A 		52
avr 10.9
(-3) 		46.6
(2) 		22.9
(-1.3) 		46.1
(2) 		53.4
(3) 		21.4
(-1.5) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 11.6
(-1.1)
A 		6.1
(-2.1)
A 		34.5
(3)
A 		0.9
(-3)
A 		34
B 2.5
(-3)
A 		29.2
(3)
A 		14.4
(-0.3)
A 		14.6
(-0.3)
A 		27
C 11.2
(-3)
A 		21.9
(3)
A 		15.8
(-0.4)
A 		12.9
(-2)
A 		11
avr 8.4
(-3) 		19.1
(1.9) 		21.6
(3) 		9.5
(-2.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.2
(-3)
A 		24.8
(3)
A 		7.6
(-1.4)
A 		20.3
(1.9)
A 		14.6
(0.4)
A 		3.3
(-2.5)
A 		24
B 2.8
(-2.8)
A 		1.7
(-3)
A 		5
(-2.3)
A 		5.7
(-2.1)
A 		29.5
(3)
A 		4.6
(-2.4)
A 		28
C 6.7
(-1.8)
A 		19.9
(3)
A 		3.3
(-3)
A 		7.3
(-1.6)
A 		12.7
(0.4)
A 		12.9
(0.5)
A 		17
avr 3.6
(-3) 		15.5
(1.7) 		5.3
(-2.3) 		11.1
(-0.1) 		18.9
(3) 		6.9
(-1.7) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181689_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3406
Sequence Type Exemplar sequence
Representative Public ID F54F11.1 NCBI
Target Description F54F11.1 /REP_DB=WormBase Gene ID /WP=CE20872 /TR=O45568 /GB=CAB05738.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064440(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064440 NCBI Caenorhabditis elegans F54F11.1 (F54F11.1) mRNA, complete cds. 11/11 None
SNAP00000024039 ENSEMBL cdna:SNAP chromosome:CEL140:II:13503886:13506735:1 11/11 None
GENEFINDER00000024043 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13503978:13506735:1 11/11 None
F54F11.1 ENSEMBL cdna:known chromosome:CEL140:II:13503978:13506735:1 gene:F54F11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13503974-13506732(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54F11.1
Entrez Gene 174995 Entrez gene
SwissProt O45568 EMBL-EBI
WormBase CE20872 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05738 Hypothetical protein F54F11.1 [Caenorhabditis elegans] ref|NP_496841.1| F54F11.1 [Caenorhabditis elegans] 1.0E-138
blast CAE73338 Hypothetical protein CBG20767 [Caenorhabditis briggsae] 1.0E-132
blast CAB05738 Hypothetical protein F54F11.1 [Caenorhabditis elegans] ref|NP_496841.1| F54F11.1 [Caenorhabditis elegans] 1.0E-131
blast CAE73338 Hypothetical protein CBG20767 [Caenorhabditis briggsae] 1.0E-128
Sequence
Target Sequence 
>C. ELEGANS:181689_AT
gccaaatcaggacccgggaacttctacttcgattcattttctggaatccaatggcaaata
aatcaatttttgtcgaataacaaatttctttccgatgatcccttggttattctgcaaacc
ggcggaactattgattttttcggcggcgatacaaattccacggaggttgtggagaatatt
cagcaaactatccagaatattacccagacgatgtcaactggaaccttggttattttatcg
cttctggatgtttccaatagtccaggtgtgcaggcagctgaagattcagacatccttcaa
gaacggctgggacatttgatcgccgagactaatcggcaactccaccacatcgtcctggac
agtgacctgggcacccgtcgcctcaacccatttcttcgtgtccgattaatcgatattaat
acagtcgcgttggcagctatgcaatcattgaacactaccgaaccatttactcatcattca
ccggatctcattccccaagcaatctacaaatatgcctaccatgacctctggaatccgtcg
acaattgtccactaccacattgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAAATCAGGACCCGGGAACTTCT 701 273 262 Antisense
ACTTCTACTTCGATTCATTTTCTGG 333 103 281 Antisense
ACAAATTTCTTTCCGATGATCCCTT 538 111 341 Antisense
TCGGCGGCGATACAAATTCCACGGA 294 597 401 Antisense
AACCTTGGTTATTTTATCGCTTCTG 17 147 483 Antisense
TCCACCACATCGTCCTGGACAGTGA 531 589 602 Antisense
ACCCATTTCTTCGTGTCCGATTAAT 379 89 647 Antisense
ACTACCGAACCATTTACTCATCATT 364 101 715 Antisense
ACAAATATGCCTACCATGACCTCTG 570 111 767 Antisense
ATGACCTCTGGAATCCGTCGACAAT 653 45 782 Antisense
GACAATTGTCCACTACCACATTGCA 429 363 801 Antisense
Sequence Source Affymetrix Proprietary Database