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[181688_at]

Description W06D11.4 /REP_DB=WormBase Gene ID /WP=CE06555 /TR=Q23200 /GB=CAA93538.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 82.1
(0.2)
A 		130
(3)
A 		32.9
(-2.8)
A 		29.1
(-3)
A 		101
B 8.8
(-3)
A 		82.8
(1.2)
A 		19.6
(-2.4)
A 		114.2
(3)
A 		105
C 55.2
(-3)
A 		98.3
(1.2)
A 		58.5
(-2.7)
A 		117.4
(3)
A 		62
avr 48.7
(-1.9) 		103.7
(3) 		37
(-3) 		86.9
(1.5) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 11.7
(-3)
A 		38.7
(-1.2)
A 		74.8
(1.2)
A 		75.8
(1.3)
A 		101.9
(3)
A 		63.2
(0.4)
A 		90
B 46.8
(-1.1)
A 		37.4
(-3)
A 		55.4
(0.6)
A 		67.2
(3)
A 		58.4
(1.2)
A 		49.6
(-0.5)
A 		30
C 45.1
(-0.4)
A 		12.9
(-3)
A 		36.1
(-1.1)
A 		13.1
(-3)
A 		86.7
(3)
A 		54.9
(0.4)
A 		74
avr 34.5
(-2.5) 		29.7
(-3) 		55.4
(-0.1) 		52
(-0.5) 		82.3
(3) 		55.9
(-0) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 29.9
(3)
A 		28.2
(2.6)
A 		8.6
(-2)
A 		4.3
(-3)
A 		26
B 2.8
(-3)
A 		20.5
(1.9)
A 		4.5
(-2.5)
A 		24.3
(3)
A 		22
C 18.3
(-3)
A 		28.3
(3)
A 		20.4
(-1.7)
A 		19.8
(-2.1)
A 		10
avr 17
(-0.6) 		25.7
(3) 		11.2
(-3) 		16.1
(-1) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 2.2
(-3)
A 		13.7
(-0.6)
A 		16.3
(-0)
A 		19.2
(0.6)
A 		30.8
(3)
A 		15.4
(-0.2)
A 		29
B 16.3
(-1)
A 		12.5
(-3)
A 		13.5
(-2.5)
A 		17.8
(-0.2)
A 		23.7
(3)
A 		18.5
(0.2)
A 		11
C 16.7
(0.3)
A 		3.9
(-2.7)
A 		9.2
(-1.4)
A 		2.6
(-3)
A 		28
(3)
A 		18.4
(0.7)
A 		25
avr 11.7
(-2.4) 		10
(-3) 		13
(-2) 		13.2
(-1.9) 		27.5
(3) 		17.4
(-0.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181688_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16940
Sequence Type Exemplar sequence
Representative Public ID W06D11.4 NCBI
Target Description W06D11.4 /REP_DB=WormBase Gene ID /WP=CE06555 /TR=Q23200 /GB=CAA93538.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077655(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077655 NCBI Caenorhabditis elegans W06D11.4 (W06D11.4) mRNA, complete cds. 11/11 None
GENEFINDER00000035026 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12300162:12302770:-1 11/11 None
SNAP00000035025 ENSEMBL cdna:SNAP chromosome:CEL140:X:12301477:12303056:-1 11/11 None
W06D11.4 ENSEMBL cdna:known chromosome:CEL140:X:12301511:12303214:-1 gene:W06D11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12301510-12303214(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06D11.4
Entrez Gene 189244 Entrez gene
SwissProt Q23200 EMBL-EBI
WormBase CE06555 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93538 Hypothetical protein W06D11.4 [Caenorhabditis elegans] ref|NP_510056.1| W06D11.4 [Caenorhabditis elegans] 0.0
blast CAA91760 Hypothetical protein F54F7.7 [Caenorhabditis elegans] ref|NP_509981.2| F54F7.7 [Caenorhabditis elegans] 2.0E-91
blast CAE60379 Hypothetical protein CBG03980 [Caenorhabditis briggsae] 7.0E-37
Sequence
Target Sequence 
>C. ELEGANS:181688_AT
gccactacgctgttggaacgtctacagtgtacggagagctccattgttcacaaatggcca
gctttgtggatcaactcaacatgggtccttccgactatttcatggatttgggaagtggaa
tcggtcatttggtgaattttgttgctgcctacgcaagaactcagatgagcgtcggagttg
agctcatggataatttggcagaaattgccgaaaagaacaaagagttcaatgagcgactcc
tcaaccacttcgggaagaaggtttacgcaacccggttcatccatggctcattcacgagtc
cggccgtcatccgagagattcaaaccaaggccaccgtcatcctcgcaaacaatgtgcgct
tcgatccagagctgaagcttcagctcaaagagatcctcatgggctgcaaggatcgaactc
gaatcatatcctcggagccgctggtcccaagtcgtgctcgtcaaacgaattcgcgtcgtg
ccgatgatttcgtcaaaatctcggatgagtctcttctcaatctcgttgacaacaatgtat
cgtggacaagtagaaaagtgccattctacttgactacaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACTACGCTGTTGGAACGTCTAC 613 273 488 Antisense
AATGGCCAGCTTTGTGGATCAACTC 48 163 540 Antisense
GGATCAACTCAACATGGGTCCTTCC 226 505 555 Antisense
GGTGAATTTTGTTGCTGCCTACGCA 179 501 618 Antisense
GTTCAATGAGCGACTCCTCAACCAC 674 445 711 Antisense
TCCGGCCGTCATCCGAGAGATTCAA 101 595 786 Antisense
CATGGGCTGCAAGGATCGAACTCGA 584 65 885 Antisense
CGAACTCGAATCATATCCTCGGAGC 394 253 901 Antisense
AATTCGCGTCGTGCCGATGATTTCG 668 177 955 Antisense
GTCTCTTCTCAATCTCGTTGACAAC 665 467 996 Antisense
AGTGCCATTCTACTTGACTACAATC 550 59 1044 Antisense
Sequence Source Affymetrix Proprietary Database