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[181687_at]

Description T04A6.3 /REP_DB=WormBase Gene ID /WP=CE00840 /TR=Q22130 /GB=AAA50674.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 5.7
(3)
A 		2.7
(-3)
A 		3.2
(-2)
A 		4.7
(1)
A 		3
B 3.5
(-1.9)
A 		1.8
(-3)
A 		11
(3)
A 		8.4
(1.3)
A 		9
C 2.4
(-2.9)
A 		3
(-2.8)
A 		1
(-3)
A 		75.4
(3)
A 		74
avr 3.9
(-2.7) 		2.5
(-3) 		5.1
(-2.4) 		29.5
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3
(-2.3)
A 		7.9
(3)
A 		4.4
(-0.8)
A 		5.7
(0.6)
A 		2.3
(-3)
A 		5.3
(0.2)
A 		6
B 1.6
(-3)
A 		17.2
(3)
A 		4.6
(-1.8)
A 		1.9
(-2.9)
A 		3.2
(-2.4)
A 		2.7
(-2.6)
A 		16
C 1
(-3)
A 		8.5
(-0.9)
A 		22.4
(3)
A 		8.1
(-1)
A 		3.2
(-2.4)
A 		5.3
(-1.8)
A 		21
avr 1.9
(-3) 		11.2
(3) 		10.5
(2.5) 		5.2
(-0.9) 		2.9
(-2.4) 		4.4
(-1.4) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.1
(3)
A 		0.6
(-3)
A 		0.8
(-2.2)
A 		0.7
(-2.6)
A 		2
B 1.1
(-1.2)
A 		0.5
(-3)
A 		2.5
(3)
A 		1.8
(0.9)
A 		2
C 0.8
(-2.8)
A 		0.9
(-2.7)
A 		0.3
(-3)
A 		12.7
(3)
A 		12
avr 1.3
(-2.2) 		0.7
(-3) 		1.2
(-2.3) 		5.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.6
(-3)
A 		2.8
(3)
A 		1
(-1.9)
A 		1.4
(-0.8)
A 		0.7
(-2.7)
A 		1.3
(-1.1)
A 		2
B 0.6
(-2.9)
A 		5.7
(3)
A 		1.1
(-2.3)
A 		0.5
(-3)
A 		1.3
(-2.1)
A 		1
(-2.4)
A 		5
C 0.4
(-3)
A 		2.6
(-0.5)
A 		5.7
(3)
A 		1.6
(-1.6)
A 		1
(-2.3)
A 		1.8
(-1.4)
A 		5
avr 0.5
(-3) 		3.7
(3) 		2.6
(0.9) 		1.2
(-1.7) 		1
(-2.1) 		1.4
(-1.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181687_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7509
Sequence Type Exemplar sequence
Representative Public ID T04A6.3 NCBI
Target Description T04A6.3 /REP_DB=WormBase Gene ID /WP=CE00840 /TR=Q22130 /GB=AAA50674.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066266(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066266 NCBI Caenorhabditis elegans T04A6.3 (T04A6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000004881 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7604278:7608214:-1 11/11 None
SNAP00000004871 ENSEMBL cdna:SNAP chromosome:CEL140:III:7605873:7608214:-1 11/11 None
T04A6.3 ENSEMBL cdna:known chromosome:CEL140:III:7606779:7610586:-1 gene:T04A6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7606776-7610584(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04A6.3
Entrez Gene 188037 Entrez gene
SwissProt Q22130 EMBL-EBI
WormBase CE00840 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA50674 Hypothetical protein T04A6.3 [Caenorhabditis elegans] ref|NP_498667.1| T04A6.3 [Caenorhabditis elegans] 0.0
blast AAA50674 Hypothetical protein T04A6.3 [Caenorhabditis elegans] ref|NP_498667.1| T04A6.3 [Caenorhabditis elegans] 1.0E-127
blast AAA50674 Hypothetical protein T04A6.3 [Caenorhabditis elegans] ref|NP_498667.1| T04A6.3 [Caenorhabditis elegans] 1.0E-124
blast AAF60821 Hypothetical protein Y59E9AL.3 [Caenorhabditis elegans] gb|AAF60820.1| Hypothetical protein Y59E9AL.2 [Caenorhabditis elegans] ref|NP_001023536.1| Y59E9AL.2 [Caenorhabditis elegans] ref|NP_001023537.1| Y59E9AL.3 [Caenorhabditis elegans] 1.0E-57
blast AAA68740 Hypothetical protein ZK546.7 [Caenorhabditis elegans] ref|NP_494900.1| ZK546.7 [Caenorhabditis elegans] 1.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498667.1 1 32-54
T04A6.3 1 32-54
GENEFINDER00000004881 2 329-351,371-388
Sequence
Target Sequence 
>C. ELEGANS:181687_AT
gatgactggtatggtgtactgggcagaggttcgacgtacaatacgtttacaacaattggt
cttggcgcagtaacgattagtcgtactcatgcaattattgatcattcaattctcaaagaa
aagatggttgagctagataaatcaacatgtcacgaagaacaagctaacgtaagattgaga
gaagatttatatatatattttatgacgtcagagcgtgacacttcagttcatctattaata
agagattcgcacttttttggatcatgtgaatcagaaaacccaaaaggttttcttgtcgta
aagtttgagaaaccaataaatcttccttacgtatgtttccccgacaattcttggaaatgg
ttcaacaaatcggtcaactcttatcgcttgacaaatgactcagatcacataattcgtaca
gagggcagggttggaccatgtggtgtcaataacaccgacacgtgctggtatatccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGACTGGTATGGTGTACTGGGCA 93 413 790 Antisense
ACTGGGCAGAGGTTCGACGTACAAT 466 97 807 Antisense
AATTGGTCTTGGCGCAGTAACGATT 27 179 843 Antisense
AACGATTAGTCGTACTCATGCAATT 176 145 861 Antisense
AGAGCGTGACACTTCAGTTCATCTA 496 69 999 Antisense
AACCAATAAATCTTCCTTACGTATG 391 145 1100 Antisense
GTATGTTTCCCCGACAATTCTTGGA 299 455 1120 Antisense
CAAATCGGTCAACTCTTATCGCTTG 456 193 1155 Antisense
GACTCAGATCACATAATTCGTACAG 707 373 1186 Antisense
GGGCAGGGTTGGACCATGTGGTGTC 248 493 1212 Antisense
ACACCGACACGTGCTGGTATATCCC 573 109 1241 Antisense
Sequence Source Affymetrix Proprietary Database