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[181685_at]

Description C10B5.1 /REP_DB=WormBase Gene ID /WP=CE08052 /TR=O16318 /GB=AAC24248.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_high_8_8 > 12      6grp_highest_nonorm > 90      6grp_total > 86      4grp_total > 12      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 101.6
(-1)
P 		107.5
(-0.7)
P 		53.3
(-3)
A 		197
(3)
P 		144
B 89.2
(-0.2)
P 		84.1
(-0.7)
P 		55.4
(-3)
P 		128.7
(3)
P 		73
C 90
(-1.5)
P 		67.4
(-2.5)
P 		55.1
(-3)
P 		199.3
(3)
P 		144
avr 93.6
(-1.1) 		86.3
(-1.4) 		54.6
(-3) 		175
(3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 77.3
(-1.2)
P 		57
(-3)
P 		126.2
(3)
P 		102.7
(1)
P 		96.5
(0.4)
P 		119.2
(2.4)
P 		69
B 67.2
(-2.5)
P 		58
(-3)
P 		114.5
(-0.2)
P 		80.6
(-1.9)
P 		116.3
(-0.1)
P 		178.4
(3)
P 		120
C 52.8
(-3)
P 		70.4
(-2.2)
P 		60.6
(-2.6)
P 		121.4
(0.1)
P 		142.3
(1.1)
P 		185.1
(3)
P 		132
avr 65.8
(-2.8) 		61.8
(-3) 		100.4
(-0.7) 		101.6
(-0.6) 		118.4
(0.4) 		160.9
(3) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 37
(3)
P 		23.3
(-0.6)
P 		13.9
(-3)
A 		28.8
(0.9)
P 		23
B 28.4
(3)
P 		20.8
(0.1)
P 		12.8
(-3)
P 		27.4
(2.6)
P 		16
C 29.8
(1.4)
P 		19.4
(-2.9)
P 		19.2
(-3)
P 		33.6
(3)
P 		14
avr 31.7
(3) 		21.2
(-0.8) 		15.3
(-3) 		29.9
(2.3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 14.2
(-3)
P 		20.3
(-0.5)
P 		27.5
(2.4)
P 		26
(1.8)
P 		29.1
(3)
P 		29
(3)
P 		15
B 23.4
(-2.5)
P 		19.3
(-3)
P 		27.8
(-1.9)
P 		21.4
(-2.7)
P 		47.3
(0.6)
P 		66.5
(3)
P 		47
C 19.6
(-2.5)
P 		21.5
(-2.2)
P 		15.4
(-3)
P 		24.4
(-1.8)
P 		46
(0.9)
P 		62
(3)
P 		47
avr 19.1
(-3) 		20.4
(-2.8) 		23.6
(-2.2) 		23.9
(-2.1) 		40.8
(0.9) 		52.5
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181685_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11697
Sequence Type Exemplar sequence
Representative Public ID C10B5.1 NCBI
Target Description C10B5.1 /REP_DB=WormBase Gene ID /WP=CE08052 /TR=O16318 /GB=AAC24248.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072812(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072812 NCBI Caenorhabditis elegans C10B5.1 (C10B5.1) mRNA, complete cds. 11/11 None
SNAP00000001564 ENSEMBL cdna:SNAP chromosome:CEL140:V:8584107:8586117:1 11/11 None
GENEFINDER00000001567 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8584107:8586117:1 11/11 None
C10B5.1 ENSEMBL cdna:known chromosome:CEL140:V:8584107:8586117:1 gene:C10B5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8583353-8586118(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10B5.1
Entrez Gene 266915 Entrez gene
SwissProt O16318 EMBL-EBI
WormBase CE30722 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24248 Hypothetical protein C10B5.1 [Caenorhabditis elegans] ref|NP_505213.2| C10B5.1 [Caenorhabditis elegans] 1.0E-172
blast CAE58363 Hypothetical protein CBG01488 [Caenorhabditis briggsae] 2.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-6
Sequence
Target Sequence 
>C. ELEGANS:181685_AT
aattcttcaatctcaacttcttttcgcttcaactgatgataaacgatatgcaaagttgtg
ttggactgaaattaaagatgagagtattccaacaaaatcgaatcgaattctggatgaagc
ggatgttaatccaatgtgtatgttagtaggagaagaaaaagaaaatgaagttttgattgg
tatggaagatggaagattagctatatgttatggagataatgggatgttcgaatgtcaggc
aaagcaaaaactgggccgtgatccgatcttctgcatcgcaagtagttcaaaatgggtggc
cgcaggatgtgcaagagctccgatttatttgcttaatagatatgatctgtcaaaacaaga
gataccgtatcccccagatgctgctggctgctcggcaatctcattctccccgaattcgaa
gcaaattattgctggattctgggatggttcgatccgtgtattctctcgtcatcgtctaaa
tgttctacttgctctcacaaatgctcactcttcaacaatttcttccataatttggttacc
tccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTTCAATCTCAACTTCTTTTC 623 175 507 Antisense
ACTTCTTTTCGCTTCAACTGATGAT 552 103 522 Antisense
GGGATGTTCGAATGTCAGGCAAAGC 17 497 727 Antisense
AAAAACTGGGCCGTGATCCGATCTT 512 129 752 Antisense
AAAATGGGTGGCCGCAGGATGTGCA 470 133 795 Antisense
GATGTGCAAGAGCTCCGATTTATTT 360 409 812 Antisense
CAAGAGATACCGTATCCCCCAGATG 385 183 862 Antisense
ATTGCTGGATTCTGGGATGGTTCGA 271 7 934 Antisense
GTCTAAATGTTCTACTTGCTCTCAC 172 469 980 Antisense
TACTTGCTCTCACAAATGCTCACTC 385 645 992 Antisense
CTTCCATAATTTGGTTACCTCCAGA 699 211 1028 Antisense
Sequence Source Affymetrix Proprietary Database