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[181683_at]

Description M03E7.2 /REP_DB=WormBase Gene ID /WP=CE07395 /TR=Q21498 /GB=AAB00725.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      6grp_total > 0      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 516
1 2 3 4 range
A 70.6
(-3)
A 		426.1
(3)
P 		349.4
(1.7)
P 		90.6
(-2.7)
A 		356
B 56.5
(-3)
A 		550.4
(3)
P 		298.5
(-0.1)
P 		83.1
(-2.7)
A 		494
C 34.9
(-3)
A 		529.2
(3)
P 		360
(0.9)
P 		45.1
(-2.9)
A 		494
avr 54
(-3) 		501.9
(3) 		336
(0.8) 		72.9
(-2.7) 		448

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 207.2
(-1.2)
A 		186.8
(-3)
P 		228
(0.7)
P 		212.2
(-0.7)
P 		253.3
(3)
P 		215.1
(-0.4)
P 		67
B 174
(-3)
P 		393.3
(3)
P 		257.6
(-0.7)
P 		174.4
(-3)
P 		280.8
(-0.1)
P 		234.3
(-1.4)
P 		219
C 149.4
(-3)
P 		348.5
(3)
P 		191.4
(-1.7)
P 		191.9
(-1.7)
P 		255.9
(0.2)
P 		191.3
(-1.7)
P 		199
avr 176.9
(-3) 		309.5
(3) 		225.7
(-0.8) 		192.8
(-2.3) 		263.3
(0.9) 		213.6
(-1.3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 25.7
(-2.1)
A 		92.5
(3)
P 		91.4
(2.9)
P 		13.3
(-3)
A 		79
B 18
(-3)
A 		135.9
(3)
P 		69.2
(-0.4)
P 		17.7
(-3)
A 		118
C 11.5
(-2.8)
A 		152.1
(3)
P 		125.5
(1.9)
P 		7.6
(-3)
A 		145
avr 18.4
(-2.7) 		126.8
(3) 		95.4
(1.3) 		12.9
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 38.2
(-3)
A 		66.4
(1.4)
P 		49.7
(-1.2)
P 		53.8
(-0.5)
P 		76.4
(3)
P 		52.4
(-0.8)
P 		38
B 60.5
(-2)
P 		130.9
(3)
P 		62.6
(-1.8)
P 		46.2
(-3)
P 		114.1
(1.8)
P 		87.4
(-0.1)
P 		85
C 55.4
(-1.5)
P 		106.4
(3)
P 		48.7
(-2.1)
P 		38.6
(-3)
P 		82.8
(0.9)
P 		64
(-0.8)
P 		68
avr 51.4
(-2.4) 		101.2
(3) 		53.7
(-2.2) 		46.2
(-3) 		91.1
(1.9) 		67.9
(-0.6) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12330
Sequence Type Exemplar sequence
Representative Public ID M03E7.2 NCBI
Target Description M03E7.2 /REP_DB=WormBase Gene ID /WP=CE07395 /TR=Q21498 /GB=AAB00725.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072082(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072082 NCBI Caenorhabditis elegans M03E7.2 (M03E7.2) mRNA, complete cds. 11/11 None
SNAP00000029716 ENSEMBL cdna:SNAP chromosome:CEL140:V:5620306:5620834:1 11/11 None
GENEFINDER00000029724 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5619049:5620834:1 9/11 None
M03E7.2 ENSEMBL cdna:known chromosome:CEL140:V:5620306:5620914:1 gene:M03E7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5620305-5620834(+) 93.22 100.0
Public Domain and Genome References
Gene Title
Ensembl M03E7.2
Entrez Gene 178948 Entrez gene
SwissProt Q21498 EMBL-EBI
WormBase CE07395 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504483.1 3 4-26,33-55,75-97
M03E7.2 3 4-26,33-55,75-97
SNAP00000029716 3 4-26,33-55,75-97
Sequence
Target Sequence 
>C. ELEGANS:181683_AT
atccagtgttttttctcttgtattctcaagcttaatcgcgatttcaagtgctcttccagc
atcgtactcctcgtcactcaatgatccacttctgtcaagcctcgggctaggttccatggg
aatgggcatgggcggcatgaatggaatgtacggaggaatgccaccaccgatgcctccacc
cggaatgagcccgtatggaatgggtggaatgggtggaatgagcccatatggaatgatggg
accaatgggtggaatgggaggaatgagcccatacggaggaggcatgtcaccatatggaat
gggatcgatgggcggtatggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCAGTGTTTTTTCTCTTGTATTC 40 41 21 Antisense
TTGTATTCTCAAGCTTAATCGCGAT 542 707 38 Antisense
TAATCGCGATTTCAAGTGCTCTTCC 626 635 53 Antisense
TTTCAAGTGCTCTTCCAGCATCGTA 59 673 62 Antisense
CTCAATGATCCACTTCTGTCAAGCC 576 227 97 Antisense
CTGTCAAGCCTCGGGCTAGGTTCCA 236 227 112 Antisense
GGAATGTACGGAGGAATGCCACCAC 291 533 163 Antisense
TCCACCCGGAATGAGCCCGTATGGA 708 549 195 Antisense
GGAGGAATGAGCCCATACGGAGGAG 305 515 277 Antisense
GGAGGAGGCATGTCACCATATGGAA 55 517 295 Antisense
GAATGGGATCGATGGGCGGTATGGG 146 333 317 Antisense
Sequence Source Affymetrix Proprietary Database