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[181682_at]

Description F10D7.1 /REP_DB=WormBase Gene ID /WP=CE04351 /TR=Q19295 /GB=AAA81719.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 03      6grp_total > 24      4grp_total > 30      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 311.9
(3)
P 		132.8
(-3)
A 		139.2
(-2.8)
A 		212.3
(-0.3)
A 		179
B 259
(3)
P 		196.1
(0.5)
M 		108.7
(-3)
A 		227.7
(1.8)
P 		150
C 313.5
(3)
P 		178.9
(-0.6)
A 		86.2
(-3)
A 		232.5
(0.9)
P 		227
avr 294.8
(3) 		169.3
(-1.1) 		111.4
(-3) 		224.2
(0.7) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 381.1
(3)
P 		339.6
(2.2)
P 		241.6
(0.4)
P 		124.6
(-1.8)
P 		98
(-2.3)
A 		63
(-3)
A 		318
B 435
(3)
P 		301.1
(0.8)
P 		255.7
(-0)
P 		141.6
(-1.9)
A 		102.7
(-2.6)
P 		77.4
(-3)
P 		358
C 500.6
(3)
P 		240.8
(-0.7)
P 		239.8
(-0.7)
P 		143
(-2.1)
A 		105.1
(-2.7)
A 		82.3
(-3)
M 		418
avr 438.9
(3) 		293.8
(0.6) 		245.7
(-0.2) 		136.4
(-2) 		101.9
(-2.5) 		74.2
(-3) 		365
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 113.5
(3)
P 		28.8
(-3)
A 		36.4
(-2.5)
A 		31.1
(-2.8)
A 		85
B 82.6
(3)
P 		48.4
(-0.6)
M 		25.2
(-3)
A 		48.5
(-0.6)
P 		57
C 103.8
(3)
P 		51.4
(-1.3)
A 		30
(-3)
A 		39.2
(-2.3)
P 		74
avr 100
(3) 		42.9
(-1.9) 		30.5
(-3) 		39.6
(-2.2) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 70.3
(0.1)
P 		120.8
(3)
P 		52.6
(-0.9)
P 		31.6
(-2.1)
P 		29.6
(-2.2)
A 		15.3
(-3)
A 		106
B 151.4
(3)
P 		100.2
(0.5)
P 		62.1
(-1.4)
P 		37.5
(-2.6)
A 		41.7
(-2.4)
P 		28.9
(-3)
P 		123
C 185.6
(3)
P 		73.5
(-1.3)
P 		61
(-1.7)
P 		28.8
(-3)
A 		34
(-2.8)
A 		27.5
(-3)
M 		158
avr 135.8
(3) 		98.2
(1) 		58.6
(-1.1) 		32.6
(-2.5) 		35.1
(-2.4) 		23.9
(-3) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181682_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17617
Sequence Type Exemplar sequence
Representative Public ID F10D7.1 NCBI
Target Description F10D7.1 /REP_DB=WormBase Gene ID /WP=CE04351 /TR=Q19295 /GB=AAA81719.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078412(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078412 NCBI Caenorhabditis elegans F10D7.1 (F10D7.1) mRNA, complete cds. 11/11 None
SNAP00000025745 ENSEMBL cdna:SNAP chromosome:CEL140:X:17359666:17364596:1 11/11 None
GENEFINDER00000025755 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17360886:17364596:1 11/11 None
F10D7.1 ENSEMBL cdna:known chromosome:CEL140:X:17359681:17364697:1 gene:F10D7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17359680-17364596(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10D7.1
Entrez Gene 184296 Entrez gene
SwissProt Q19295 EMBL-EBI
WormBase CE04351 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81719 Hypothetical protein F10D7.1 [Caenorhabditis elegans] ref|NP_510813.1| F10D7.1 [Caenorhabditis elegans] 0.0
blast CAE69684 Hypothetical protein CBG15937 [Caenorhabditis briggsae] 1.0E-159
blast CAE69684 Hypothetical protein CBG15937 [Caenorhabditis briggsae] 1.0E-158
blast CAE69684 Hypothetical protein CBG15937 [Caenorhabditis briggsae] 1.0E-155
blast CAE62061 Hypothetical protein CBG06079 [Caenorhabditis briggsae] 8.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510813.1 6 15-37,44-66,81-103,131-153,177-199,212-234
F10D7.1 6 15-37,44-66,81-103,131-153,177-199,212-234
SNAP00000025745 6 20-42,62-84,104-126,139-161,190-212,233-250
GENEFINDER00000025755 4 5-27,40-62,91-113,134-156
Sequence
Target Sequence 
>C. ELEGANS:181682_AT
gatgttgcaagagctttcctcacaagaagcgaaagatttcatgaaaaaatcacaaaacac
gtccaactccgattccatcaacaattccactttgtcttcggaagatgccgacgattcatc
aacggatttgatcagttcagttgtgtccgttccaccggaaagttctgatgccgtcaccac
accggacagcagcgacttcaatgaaccggaagccgtgacgccatcaaggccaatgatgtt
gtccgaatttgcaagtcacctagccggcgggattcggcaaagagtagaaacgacgacact
gccgttaccggaatttccgactccaaaatcgtcggtgttcagtgtacttcctgatgatac
gttccctgatatggtggcagaggccaaagactttatccgccgatacctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTTGCAAGAGCTTTCCTCACAA 496 409 1116 Antisense
CACAAAACACGTCCAACTCCGATTC 151 193 1166 Antisense
TTGATCAGTTCAGTTGTGTCCGTTC 27 705 1243 Antisense
CGGAAAGTTCTGATGCCGTCACCAC 15 243 1271 Antisense
CACCGGACAGCAGCGACTTCAATGA 242 201 1295 Antisense
AATGAACCGGAAGCCGTGACGCCAT 273 163 1315 Antisense
CGAATTTGCAAGTCACCTAGCCGGC 648 253 1359 Antisense
GACACTGCCGTTACCGGAATTTCCG 689 347 1410 Antisense
AATCGTCGGTGTTCAGTGTACTTCC 231 169 1442 Antisense
CTTCCTGATGATACGTTCCCTGATA 517 219 1462 Antisense
CAAAGACTTTATCCGCCGATACCTG 231 193 1500 Antisense
Sequence Source Affymetrix Proprietary Database