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[181680_s_at]

Description C34E11.3 /REP_DB=WormBase Gene ID /WP=CE08573 /TR=Q20795 /GB=CAB02323.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 80      6grp_total > 12      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 330.5
(3)
P 		130.6
(-2.7)
P 		124.4
(-2.9)
P 		120.9
(-3)
P 		210
B 391.7
(3)
P 		165.4
(-2.3)
P 		134.8
(-3)
P 		135.6
(-3)
P 		257
C 360.8
(3)
P 		193.6
(-2.7)
P 		187.9
(-2.9)
P 		185.7
(-3)
P 		175
avr 361
(3) 		163.2
(-2.6) 		149
(-3) 		147.4
(-3) 		214

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 246.3
(1.9)
P 		275.3
(3)
P 		213.2
(0.7)
P 		189
(-0.2)
P 		132.1
(-2.4)
P 		115
(-3)
P 		160
B 247.5
(2)
P 		272.6
(3)
P 		174
(-0.7)
P 		178.5
(-0.6)
P 		114.3
(-3)
P 		158.7
(-1.3)
P 		158
C 238.3
(0.4)
P 		357.6
(3)
P 		230.3
(0.2)
P 		212.9
(-0.2)
P 		84.7
(-3)
P 		109.6
(-2.5)
P 		273
avr 244
(1.2) 		301.8
(3) 		205.8
(-0) 		193.5
(-0.4) 		110.4
(-3) 		127.8
(-2.5) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 120.3
(3)
P 		28.4
(-2.4)
P 		32.5
(-2.1)
P 		17.7
(-3)
P 		103
B 124.9
(3)
P 		40.9
(-2.3)
P 		31.2
(-2.9)
P 		28.9
(-3)
P 		96
C 119.4
(3)
P 		55.7
(-1.3)
P 		65.5
(-0.7)
P 		31.3
(-3)
P 		88
avr 121.5
(3) 		41.7
(-2) 		43.1
(-1.9) 		26
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 45.4
(-1.5)
P 		97.9
(3)
P 		46.4
(-1.4)
P 		47.9
(-1.3)
P 		39.9
(-2)
P 		28
(-3)
P 		70
B 86.1
(2.4)
P 		90.7
(3)
P 		42.3
(-3)
P 		47.3
(-2.4)
P 		46.4
(-2.5)
P 		59.2
(-0.9)
P 		48
C 88.3
(1.5)
P 		109.1
(3)
P 		58.6
(-0.7)
P 		42.8
(-1.9)
P 		27.4
(-3)
P 		36.7
(-2.3)
P 		82
avr 73.3
(0.5) 		99.2
(3) 		49.1
(-1.9) 		46
(-2.2) 		37.9
(-3) 		41.3
(-2.7) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181680_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16923
Sequence Type Exemplar sequence
Representative Public ID C34E11.3 NCBI
Target Description C34E11.3 /REP_DB=WormBase Gene ID /WP=CE08573 /TR=Q20795 /GB=CAB02323.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077574 NCBI Caenorhabditis elegans C34E11.3 (C34E11.3) mRNA, complete cds. 11/11 None
SNAP00000009555 ENSEMBL cdna:SNAP chromosome:CEL140:X:11832603:11835802:1 11/11 None
GENEFINDER00000009564 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11833358:11835802:1 11/11 None
C34E11.3 ENSEMBL cdna:known chromosome:CEL140:X:11826637:11836036:1 gene:C34E11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11826636-11835802(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34E11.3
Entrez Gene 181360 Entrez gene
SwissProt Q20795 EMBL-EBI
WormBase CE08573 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1639778_AT dm
DROSGENOME1:145932_AT dm
DROSGENOME1:145931_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB02323 Hypothetical protein C34E11.3 [Caenorhabditis elegans] emb|CAA91761.1| Hypothetical protein C34E11.3 [Caenorhabditis elegans] emb|CAA91753.1| Hypothetical protein C34E11.3 [Caenorhabditis elegans] ref|NP_509975.1| C34E11.3 [Caenorhabditis elegans] 0.0
blast CAE69421 Hypothetical protein CBG15585 [Caenorhabditis briggsae] 0.0
blast EAA10144 ENSANGP00000011098 [Anopheles gambiae str. PEST] ref|XP_314825.2| ENSANGP00000011098 [Anopheles gambiae str. PEST] 1.0E-42
Sequence
Target Sequence 
>C. ELEGANS:181680_S_AT
cgagctgcttcattcgataaccgcagccagtttagtgaggacgaggtgaccgaggatgga
aggagctcccggcccaacagcacgggcgcaaatattctgtatagagttcgaagagaggaa
ctggcacgtggcggacagccatcggtgaaactgatggcaaaggcttttgaggcaattgat
gagccgagaacggataagagagggttctttggaattaggaagtcaagatcagtggaaacg
acgcaaaatgggaagcatagtaaatttgaagaagctgctaactcagccttgatgcacagt
ttgggacaagtagaggaaggagtcagcagcaattatgcaaccctaccaagaggaggtcga
aatcctttcaaaaatatggggtctcgtttggtggagcgtgttcgcagaagctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGCTGCTTCATTCGATAACCGCA 424 251 4174 Antisense
GATAACCGCAGCCAGTTTAGTGAGG 399 409 4189 Antisense
ACCGAGGATGGAAGGAGCTCCCGGC 155 89 4222 Antisense
AGCACGGGCGCAAATATTCTGTATA 484 77 4252 Antisense
AGAGAGGAACTGGCACGTGGCGGAC 353 65 4285 Antisense
GGCGGACAGCCATCGGTGAAACTGA 597 495 4303 Antisense
GAAGCTGCTAACTCAGCCTTGATGC 505 343 4444 Antisense
TCAGCCTTGATGCACAGTTTGGGAC 696 623 4456 Antisense
AGCAATTATGCAACCCTACCAAGAG 35 77 4501 Antisense
TATGGGGTCTCGTTTGGTGGAGCGT 421 653 4548 Antisense
GGTGGAGCGTGTTCGCAGAAGCTTA 66 499 4563 Antisense
Sequence Source Affymetrix Proprietary Database