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[181679_s_at]

Description B0273.3 /REP_DB=WormBase Gene ID /WP=CE16789 /TR=O44168 /GB=AAB88352.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 48.2
(-2.3)
A 		36.2
(-3)
A 		119.8
(2)
A 		136
(3)
A 		100
B 61.9
(-3)
A 		77.8
(-1.2)
A 		85
(-0.4)
A 		114.3
(3)
P 		52
C 56.3
(-3)
A 		68.8
(-2.4)
A 		106
(-0.5)
A 		175.6
(3)
P 		119
avr 55.5
(-3) 		60.9
(-2.6) 		103.6
(0.3) 		142
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 92.4
(-1.1)
A 		31.7
(-3)
A 		87.4
(-1.2)
A 		103.8
(-0.7)
M 		220.6
(3)
P 		213.7
(2.8)
P 		189
B 37.4
(-3)
A 		60.9
(-2.5)
A 		100.5
(-1.6)
A 		98.3
(-1.7)
A 		270.2
(2.1)
P 		310.4
(3)
P 		273
C 33.9
(-3)
A 		96.9
(-1.3)
A 		40.4
(-2.8)
A 		111.3
(-1)
A 		200.6
(1.4)
P 		262.9
(3)
P 		229
avr 54.6
(-3) 		63.2
(-2.8) 		76.1
(-2.4) 		104.5
(-1.6) 		230.5
(2.1) 		262.3
(3) 		208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 17.6
(-0.5)
A 		7.9
(-3)
A 		31.3
(3)
A 		19.9
(0.1)
A 		23
B 19.8
(-2.3)
A 		19.2
(-3)
A 		19.7
(-2.4)
A 		24.4
(3)
P 		5
C 18.6
(-3)
A 		19.8
(-2.6)
A 		36.9
(3)
A 		29.6
(0.6)
P 		18
avr 18.7
(-1.6) 		15.6
(-3) 		29.3
(3) 		24.6
(0.9) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 17
(-2.4)
A 		11.3
(-3)
A 		19
(-2.2)
A 		26.3
(-1.4)
M 		66.6
(3)
P 		52
(1.4)
P 		55
B 13
(-3)
A 		20.3
(-2.6)
A 		24.4
(-2.3)
A 		26
(-2.2)
A 		109.8
(2.6)
P 		115.8
(3)
P 		103
C 12.6
(-2.8)
A 		29.6
(-1.5)
A 		10.3
(-3)
A 		22.4
(-2.1)
A 		64.9
(1.2)
P 		88
(3)
P 		78
avr 14.2
(-3) 		20.4
(-2.5) 		17.9
(-2.7) 		24.9
(-2.1) 		80.4
(2.6) 		85.3
(3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181679_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11225
Sequence Type Exemplar sequence
Representative Public ID B0273.3 NCBI
Target Description B0273.3 /REP_DB=WormBase Gene ID /WP=CE16789 /TR=O44168 /GB=AAB88352.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058305(11), NM_064373(11), NM_068418(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058305 NCBI Caenorhabditis elegans Y48G1BM.1 (Y48G1BM.1) mRNA, complete cds. 11/11 A 
NM_064373 NCBI Caenorhabditis elegans F18A11.6 (F18A11.6) mRNA, complete cds. 11/11 A 
NM_068418 NCBI Caenorhabditis elegans B0273.3 (B0273.3) mRNA, complete cds. 11/11 A 
SNAP00000014671 ENSEMBL cdna:SNAP chromosome:CEL140:I:246114:254129:1 11/11 None
GENEFINDER00000014675 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:252119:254129:1 11/11 None
SNAP00000028431 ENSEMBL cdna:SNAP chromosome:CEL140:II:13044660:13045867:1 11/11 None
SNAP00000012460 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5484177:5490076:-1 11/11 None
GENEFINDER00000012467 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5484177:5486197:-1 11/11 None
Y48G1BM.1 ENSEMBL cdna:known chromosome:CEL140:I:250984:254129:1 gene:Y48G1BM.1 11/11 A 
F18A11.6 ENSEMBL cdna:known chromosome:CEL140:II:13043899:13045946:1 gene:F18A11.6 11/11 A 
B0273.3 ENSEMBL cdna:known chromosome:CEL140:IV:5484177:5486197:-1 gene:B0273.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028445 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:252118-254129(+) 98.98 98.98
chrII:13043839-13045864(+) 99.22 99.22
chrIV:5484182-5486203(-) 100.0 100.0
Public Domain and Genome References
Gene Title


Ensembl Y48G1BM.1
F18A11.6
B0273.3
Entrez Gene 171615 Entrez gene
174948 Entrez gene
177331 Entrez gene
SwissProt O44168 EMBL-EBI
Q9TVS5 EMBL-EBI
Q965U6 EMBL-EBI
WormBase CE16789 Wormbase
CE20691 Wormbase
CE26122 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605015_AT similar to small nuclear RNA activating complex, polypeptide 3, 50kDa cfa
CANINE_2:CFA.20849.1.S1_S_AT similar to small nuclear RNA activating complex, polypeptide 3, 50kDa cfa
CANINE_2:CFA.2399.1.A1_AT similar to small nuclear RNA activating complex, polypeptide 3, 50kDa cfa
DROSOPHILA_2:1639367_A_AT dm
DROSGENOME1:153915_AT dm
HU35KSUBA:RC_AA398595_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U133_PLUS_2:222286_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U133A_2:222286_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U133A:222286_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U133_PLUS_2:210465_S_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U133A:210465_S_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U133A_2:210465_S_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U133_PLUS_2:204001_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U133A_2:204001_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U133A:204001_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-FOCUS:204001_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HU35KSUBD:RC_AA446555_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HUGENEFL:U71300_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
U133_X3P:G4507104_3P_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
U133_X3P:G1619945_3P_X_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
U133_X3P:G1619945_3P_S_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
U133_X3P:G1619945_3P_A_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
U133_X3P:HS.82110.2.A1_3P_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
U133_X3P:HS.22574.0.A1_3P_X_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
U133_X3P:HS.22574.0.A1_3P_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
U133_X3P:210465_3P_S_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U133_PLUS_2:229712_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U133B:229712_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U95AV2:38224_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U95B:43446_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U95B:44248_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U95C:64182_AT small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U95E:76992_R_AT Small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HG-U95E:90650_AT Small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HU35KSUBD:RC_AA609454_R_AT Small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HU35KSUBB:RC_N50875_AT Small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HU35KSUBD:RC_AA281600_AT Small nuclear RNA activating complex, polypeptide 3, 50kDa hs
HU35KSUBD:RC_H50342_AT Small nuclear RNA activating complex, polypeptide 3, 50kDa hs
MU11KSUBA:AA414991_RC_AT small nuclear RNA activating complex, polypeptide 3 mm
MG-U74AV2:97705_AT small nuclear RNA activating complex, polypeptide 3 mm
MG-U74BV2:105193_AT small nuclear RNA activating complex, polypeptide 3 mm
MG-U74BV2:111599_AT small nuclear RNA activating complex, polypeptide 3 mm
MG-U74BV2:163775_AT small nuclear RNA activating complex, polypeptide 3 mm
MG-U74CV2:169404_AT small nuclear RNA activating complex, polypeptide 3 mm
MOE430A:1428760_AT small nuclear RNA activating complex, polypeptide 3 mm
MOUSE430A_2:1428760_AT small nuclear RNA activating complex, polypeptide 3 mm
MOUSE430_2:1428760_AT small nuclear RNA activating complex, polypeptide 3 mm
MOE430A:1453077_A_AT small nuclear RNA activating complex, polypeptide 3 mm
MOUSE430A_2:1453077_A_AT small nuclear RNA activating complex, polypeptide 3 mm
MOUSE430_2:1453077_A_AT small nuclear RNA activating complex, polypeptide 3 mm
MOE430A:1428761_A_AT small nuclear RNA activating complex, polypeptide 3 mm
MOUSE430A_2:1428761_A_AT small nuclear RNA activating complex, polypeptide 3 mm
MOUSE430_2:1428761_A_AT small nuclear RNA activating complex, polypeptide 3 mm
MOE430B:1457731_AT small nuclear RNA activating complex, polypeptide 3 mm
MOUSE430_2:1457731_AT small nuclear RNA activating complex, polypeptide 3 mm
MU19KSUBB:TC28847_AT small nuclear RNA activating complex, polypeptide 3 mm
MG-U74AV2:162054_R_AT Small nuclear RNA activating complex, polypeptide 3 (Snapc3), mRNA mm
MU19KSUBA:TC25483_AT Small nuclear RNA activating complex, polypeptide 3 (Snapc3), mRNA mm
RAE230B:1393161_AT small nuclear RNA activating complex, polypeptide 3 (predicted) rn
RAT230_2:1393161_AT small nuclear RNA activating complex, polypeptide 3 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK68493 Hypothetical protein Y48G1BM.1 [Caenorhabditis elegans] ref|NP_490706.1| Y48G1BM.1 [Caenorhabditis elegans] 0.0
blast AAB88352 Hypothetical protein B0273.3 [Caenorhabditis elegans] ref|NP_500819.1| B0273.3 [Caenorhabditis elegans] 0.0
blast CAB03097 Hypothetical protein F18A11.6 [Caenorhabditis elegans] emb|CAB04137.1| Hypothetical protein F18A11.6 [Caenorhabditis elegans] ref|NP_496774.1| F18A11.6 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181679_S_AT
gacacgttttatatcgactcgaacactggcgaccagtttgtggatccgtcgatcacaatc
cgaacttgggccaaaaagttcgactacatcggtccgatgcacgtgaaacagatgtcggag
acgaggatcggggatctcatttgtcggctcggtcagccatacgtctacattcatcaaggc
gtctgcgagcacctcatcgtcttcaatgacttgtgcctgagagatgaatcccacacaaac
gtcgaatttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACGTTTTATATCGACTCGAACA 697 359 790 Antisense
GTGGATCCGTCGATCACAATCCGAA 76 491 829 Antisense
AAAGTTCGACTACATCGGTCCGATG 247 123 864 Antisense
ATCGGTCCGATGCACGTGAAACAGA 240 35 877 Antisense
GAGGATCGGGGATCTCATTTGTCGG 338 401 912 Antisense
TCATTTGTCGGCTCGGTCAGCCATA 376 619 926 Antisense
CATTCATCAAGGCGTCTGCGAGCAC 350 215 957 Antisense
GCACCTCATCGTCTTCAATGACTTG 210 315 978 Antisense
TCGTCTTCAATGACTTGTGCCTGAG 641 603 986 Antisense
GTGCCTGAGAGATGAATCCCACACA 271 479 1002 Antisense
ATCCCACACAAACGTCGAATTTCCA 671 37 1017 Antisense
Sequence Source Affymetrix Proprietary Database