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[181678_at]

Description T15B7.8 /REP_DB=WormBase Gene ID /WP=CE18258 /TR=O17031 /GB=AAB69974.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 27.2
(3)
A 		4.9
(-2.6)
A 		3.1
(-3)
A 		20.8
(1.4)
A 		24
B 19.8
(-1.2)
A 		3.4
(-3)
A 		3.8
(-3)
A 		58.9
(3)
A 		56
C 6.9
(-3)
A 		26.6
(-1.2)
A 		10.5
(-2.7)
A 		71.8
(3)
A 		65
avr 18
(-1.4) 		11.6
(-2.2) 		5.8
(-3) 		50.5
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 7.9
(-2.6)
A 		4.6
(-3)
A 		20.3
(-1)
A 		51.9
(3)
A 		15.1
(-1.7)
A 		19.8
(-1.1)
A 		47
B 6.4
(-1.9)
A 		26.9
(3)
A 		3.7
(-2.5)
A 		1.8
(-3)
A 		2.6
(-2.8)
A 		13.1
(-0.3)
A 		25
C 22.2
(1)
A 		4.8
(-2.5)
A 		20.4
(0.7)
A 		31.9
(3)
A 		2.4
(-3)
A 		3.2
(-2.8)
A 		30
avr 12.2
(-1.5) 		12.1
(-1.5) 		14.8
(-0.8) 		28.5
(3) 		6.7
(-3) 		12
(-1.5) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.9
(3)
A 		1.1
(-2.8)
A 		0.8
(-3)
A 		3
(-1.5)
A 		9
B 6.3
(-0.2)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		12.5
(3)
A 		12
C 2.3
(-3)
A 		7.7
(0.3)
A 		3.7
(-2.1)
A 		12.1
(3)
A 		10
avr 6.2
(0.6) 		3.2
(-1.9) 		1.8
(-3) 		9.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.5
(-3)
A 		1.6
(-2.9)
A 		4.4
(-1.5)
A 		13.2
(3)
A 		4.6
(-1.4)
A 		4.8
(-1.3)
A 		12
B 2.2
(-1.8)
A 		8.9
(3)
A 		0.9
(-2.7)
A 		0.5
(-3)
A 		1
(-2.6)
A 		4.9
(0.1)
A 		8
C 8.2
(3)
A 		1.5
(-2.4)
A 		5.2
(0.6)
A 		6.4
(1.5)
A 		0.8
(-3)
A 		1.1
(-2.8)
A 		7
avr 4
(-0.5) 		4
(-0.5) 		3.5
(-1.2) 		6.7
(3) 		2.1
(-3) 		3.6
(-1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181678_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11728
Sequence Type Exemplar sequence
Representative Public ID T15B7.8 NCBI
Target Description T15B7.8 /REP_DB=WormBase Gene ID /WP=CE18258 /TR=O17031 /GB=AAB69974.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072330(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072330 NCBI Caenorhabditis elegans T15B7.8 (T15B7.8) mRNA, complete cds. 11/11 None
GENEFINDER00000035396 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6823796:6829466:1 10/11 None
T15B7.8 ENSEMBL cdna:known chromosome:CEL140:V:6823796:6826356:1 gene:T15B7.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035383 1/11 Cross Hyb Matching Probes None
SNAP00000035386 3/11 Cross Hyb Matching Probes None
GENEFINDER00000035403 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6823796-6826357(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15B7.8
Entrez Gene 188518 Entrez gene
SwissProt O17031 EMBL-EBI
WormBase CE18258 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503697 Y45G12C.11 [Caenorhabditis elegans] gb|AAF60585.2| Hypothetical protein Y45G12C.11 [Caenorhabditis elegans] 0.0
blast AAF39844 Hypothetical protein F56A4.6 [Caenorhabditis elegans] ref|NP_503670.2| F56A4.6 [Caenorhabditis elegans] 0.0
blast AAD32270 Hypothetical protein F02C9.2 [Caenorhabditis elegans] ref|NP_503859.2| F02C9.2 [Caenorhabditis elegans] 0.0
blast AAB69974 Hypothetical protein T15B7.8 [Caenorhabditis elegans] ref|NP_504731.1| T15B7.8 [Caenorhabditis elegans] 1.0E-165
blast NP_503697 Y45G12C.11 [Caenorhabditis elegans] gb|AAF60585.2| Hypothetical protein Y45G12C.11 [Caenorhabditis elegans] 2.0E-73
blast AAF39844 Hypothetical protein F56A4.6 [Caenorhabditis elegans] ref|NP_503670.2| F56A4.6 [Caenorhabditis elegans] 1.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504731.1 1 29-51
T15B7.8 1 29-51
GENEFINDER00000035396 2 29-51,815-837
Sequence
Target Sequence 
>C. ELEGANS:181678_AT
tcatacccaacgctagttcctggaagggccaagaatctgacaaatacagtgaaacgtaga
tctaattttgcaatcgatccagtatctagaattaaagctggaaataaatggattgtggtc
acaactattagttcgccaacggaagatatcaagagacttgcatcatttgtggattggaac
ttggtagtggttgcagataccaaaactccgttagattggaaactggaaaatgttcacttc
ttgtctgtgcaatatcaaagacagttgcctttttccctagtttcatcactgccttataaa
tcttatacacggaaaaatattggatatttgtatgcaatatctcaaggagctgaatgggtt
tatgacactgatgatgacaataaaccttatgataagttaagaaaaattaaaacaaaaaca
ataacaacgtcttttcaacccttatcgattttatggtatggatcgaatgtgcccaagggg
gttcccaaacacactaatggaaatgaaactcttgttttatgctatcagatgaaacgagca
gccgtgcaacaaggattggttcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATACCCAACGCTAGTTCCTGGAA 373 547 298 Antisense
GTTCCTGGAAGGGCCAAGAATCTGA 97 441 313 Antisense
TAATTTTGCAATCGATCCAGTATCT 272 635 360 Antisense
ATTAGTTCGCCAACGGAAGATATCA 156 11 424 Antisense
GGTTGCAGATACCAAAACTCCGTTA 241 507 486 Antisense
CAAAGACAGTTGCCTTTTTCCCTAG 52 191 553 Antisense
TCTTTTCAACCCTTATCGATTTTAT 624 615 727 Antisense
TCGAATGTGCCCAAGGGGGTTCCCA 164 599 760 Antisense
AAACTCTTGTTTTATGCTATCAGAT 601 127 803 Antisense
AAACGAGCAGCCGTGCAACAAGGAT 589 123 829 Antisense
GCCGTGCAACAAGGATTGGTTCATC 341 283 838 Antisense
Sequence Source Affymetrix Proprietary Database