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[181675_at]

Description R03G5.6 /REP_DB=WormBase Gene ID /WP=CE07403 /TR=Q21668 /GB=AAA96066.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 35      4grp_high_8_8 > 27      6grp_highest_nonorm > 90      6grp_total > 35      4grp_total > 37      6grp_highest_sub > 01_02      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 178.3
(2.4)
P 		187.2
(3)
P 		93.9
(-3)
M 		159.2
(1.2)
P 		93
B 168.2
(1.6)
P 		181.7
(3)
P 		124
(-3)
M 		159.9
(0.7)
P 		58
C 206.8
(3)
P 		155.9
(-0.5)
P 		119.9
(-3)
P 		151.4
(-0.8)
P 		87
avr 184.4
(3) 		174.9
(2.2) 		112.6
(-3) 		156.8
(0.7) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 149.1
(0.8)
P 		186.5
(3)
P 		96.6
(-2.3)
P 		83.8
(-3)
P 		105.9
(-1.7)
P 		107.8
(-1.6)
P 		103
B 187.2
(3)
P 		158.7
(1.3)
P 		180.9
(2.6)
P 		84.3
(-3)
P 		101.9
(-2)
P 		131.4
(-0.3)
P 		103
C 192.4
(1.9)
P 		210.4
(3)
P 		147.3
(-0.9)
P 		129
(-2)
P 		113.4
(-3)
P 		152.3
(-0.6)
P 		97
avr 176.2
(2.4) 		185.2
(3) 		141.6
(-0) 		99
(-3) 		107.1
(-2.4) 		130.5
(-0.8) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 64.9
(3)
P 		40.6
(-0.5)
P 		24.5
(-2.8)
M 		23.3
(-3)
P 		42
B 53.6
(3)
P 		44.9
(0.9)
P 		28.7
(-3)
M 		34.1
(-1.7)
P 		25
C 68.4
(3)
P 		44.8
(-0.3)
P 		41.8
(-0.7)
P 		25.5
(-3)
P 		43
avr 62.3
(3) 		43.4
(-0.3) 		31.7
(-2.3) 		27.6
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 27.5
(-2.1)
P 		66.3
(3)
P 		21
(-3)
P 		21.3
(-3)
P 		31.9
(-1.6)
P 		26.3
(-2.3)
P 		45
B 65.1
(3)
P 		52.8
(1.3)
P 		43.9
(0)
P 		22.3
(-3)
P 		41.4
(-0.3)
P 		49
(0.7)
P 		43
C 71.3
(3)
P 		64.2
(2.1)
P 		37.5
(-1.5)
P 		25.9
(-3)
P 		36.7
(-1.6)
P 		51
(0.3)
P 		45
avr 54.6
(2) 		61.1
(3) 		34.1
(-1.3) 		23.2
(-3) 		36.7
(-0.9) 		42.1
(-0) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181675_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16914
Sequence Type Exemplar sequence
Representative Public ID R03G5.6 NCBI
Target Description R03G5.6 /REP_DB=WormBase Gene ID /WP=CE07403 /TR=Q21668 /GB=AAA96066.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076920 NCBI Caenorhabditis elegans R03G5.6 (R03G5.6) mRNA, complete cds. 11/11 None
GENEFINDER00000013522 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7806044:7809051:-1 11/11 None
R03G5.6 ENSEMBL cdna:known chromosome:CEL140:X:7807192:7809024:-1 gene:R03G5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7807190-7809023(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03G5.6
Entrez Gene 187543 Entrez gene
SwissProt Q21668 EMBL-EBI
WormBase CE07403 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE70284 Hypothetical protein CBG16801 [Caenorhabditis briggsae] 4.0E-68
blast AAM69099 Hypothetical protein R03G5.7 [Caenorhabditis elegans] ref|NP_741847.1| R03G5.7 [Caenorhabditis elegans] 5.0E-41
blast AAA96066 Hypothetical protein R03G5.6 [Caenorhabditis elegans] ref|NP_509321.1| R03G5.6 [Caenorhabditis elegans] 1.0E-36
blast AAA96066 Hypothetical protein R03G5.6 [Caenorhabditis elegans] ref|NP_509321.1| R03G5.6 [Caenorhabditis elegans] 1.0E-33
blast CAE70284 Hypothetical protein CBG16801 [Caenorhabditis briggsae] 2.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013522 4 80-102,117-139,156-178,183-200
Sequence
Target Sequence 
>C. ELEGANS:181675_AT
atgcctccgtttcgagagcgattggggacgggatgcacaaaggatagcaaggactctgga
atcgagttgttacctaaagcaaaaaagcaacgaaatcgaaatcgacatcgagctcgcatg
caaacaagtgcccgcaagaaaccaatcagttcgataaaggaacatcttgttgacagtcga
cgagaagacgccaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCTCCGTTTCGAGAGCGATTGG 475 41 13 Antisense
GAGAGCGATTGGGGACGGGATGCAC 63 395 26 Antisense
GGGGACGGGATGCACAAAGGATAGC 550 495 36 Antisense
AGGATAGCAAGGACTCTGGAATCGA 710 53 53 Antisense
CTGGAATCGAGTTGTTACCTAAAGC 66 241 68 Antisense
AAATCGACATCGAGCTCGCATGCAA 231 119 111 Antisense
AGCTCGCATGCAAACAAGTGCCCGC 223 81 123 Antisense
AAGTGCCCGCAAGAAACCAATCAGT 194 157 138 Antisense
GCCCGCAAGAAACCAATCAGTTCGA 656 285 142 Antisense
GGAACATCTTGTTGACAGTCGACGA 416 529 171 Antisense
GACAGTCGACGAGAAGACGCCAAAC 543 369 184 Antisense
Sequence Source Affymetrix Proprietary Database