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[181674_at]

Description T08H4.2 /REP_DB=WormBase Gene ID /WP=CE04927 /TR=Q22353 /GB=AAC71119.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 27      6grp_total > 26      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 74.7
(-1.1)
M 		68.8
(-1.7)
M 		54.5
(-3)
A 		119.5
(3)
P 		65
B 29.6
(-3)
A 		89.6
(3)
M 		66.2
(0.7)
P 		38.8
(-2.1)
A 		60
C 121.9
(2.6)
P 		124.8
(3)
P 		75.5
(-3)
P 		95.7
(-0.5)
P 		49
avr 75.4
(-0.9) 		94.4
(3) 		65.4
(-3) 		84.7
(1) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 89.6
(2.4)
A 		98.8
(3)
P 		11.8
(-3)
A 		21.2
(-2.4)
A 		65.9
(0.7)
A 		57.8
(0.2)
A 		87
B 69.1
(3)
A 		64.2
(2.5)
A 		69
(3)
P 		16.1
(-2.3)
A 		9.3
(-3)
A 		42.8
(0.4)
P 		60
C 63.9
(2.7)
A 		66.3
(3)
A 		21.2
(-3)
A 		42
(-0.2)
A 		30.1
(-1.8)
A 		62.1
(2.4)
P 		45
avr 74.2
(2.7) 		76.4
(3) 		34
(-2.1) 		26.4
(-3) 		35.1
(-2) 		54.2
(0.3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 27.2
(3)
M 		14.9
(-2.7)
M 		14.3
(-3)
A 		17.5
(-1.5)
P 		13
B 9.5
(-2.5)
A 		22.1
(3)
M 		15.3
(0)
P 		8.3
(-3)
A 		14
C 40.4
(3)
P 		35.9
(1.9)
P 		26.3
(-0.5)
P 		16.1
(-3)
P 		24
avr 25.7
(3) 		24.3
(2.3) 		18.6
(-0.6) 		14
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 16.5
(-0.4)
A 		35.2
(3)
P 		2.6
(-3)
A 		5.4
(-2.5)
A 		19.9
(0.2)
A 		14.1
(-0.9)
A 		33
B 24.1
(3)
A 		21.4
(2.2)
A 		16.8
(0.8)
P 		4.3
(-2.9)
A 		3.8
(-3)
A 		16
(0.6)
P 		20
C 23.7
(3)
A 		20.2
(1.9)
A 		5.4
(-3)
A 		8.5
(-2)
A 		9.7
(-1.6)
A 		20.8
(2)
P 		18
avr 21.4
(1.7) 		25.6
(3) 		8.3
(-2.3) 		6.1
(-3) 		11.1
(-1.5) 		17
(0.4) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181674_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5278
Sequence Type Exemplar sequence
Representative Public ID T08H4.2 NCBI
Target Description T08H4.2 /REP_DB=WormBase Gene ID /WP=CE04927 /TR=Q22353 /GB=AAC71119.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062321
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000025209 ENSEMBL cdna:SNAP chromosome:CEL140:II:4111742:4113622:1 None
T08H4.2 ENSEMBL cdna:known chromosome:CEL140:II:4109201:4112813:1 gene:T08H4.2 None
GENEFINDER00000025215 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4111742:4114504:1 None
NM_062321 NCBI Caenorhabditis elegans T08H4.2 (T08H4.2) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4111740-4112812(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08H4.2
Entrez Gene 3565319 Entrez gene
SwissProt Q22353 EMBL-EBI
WormBase CE29471 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71119 Hypothetical protein T08H4.2 [Caenorhabditis elegans] ref|NP_494722.1| T08H4.2 [Caenorhabditis elegans] 4.0E-99
blast AAC71119 Hypothetical protein T08H4.2 [Caenorhabditis elegans] ref|NP_494722.1| T08H4.2 [Caenorhabditis elegans] 1.0E-45
blast AAC71119 Hypothetical protein T08H4.2 [Caenorhabditis elegans] ref|NP_494722.1| T08H4.2 [Caenorhabditis elegans] 3.0E-45
blast CAE71514 Hypothetical protein CBG18447 [Caenorhabditis briggsae] 1.0E-44
blast CAE71514 Hypothetical protein CBG18447 [Caenorhabditis briggsae] 2.0E-44
blast CAE71514 Hypothetical protein CBG18447 [Caenorhabditis briggsae] 1.0E-27
Sequence
Target Sequence 
>C. ELEGANS:181674_AT
cgaaaacagtcgtcgttccatcgggaacgagtccaaaacgaggcgagcattcgtatcagg
tcccattccgccaagtgtaagaatcgcattcatcacattgacatcgatccaccgcagatc
aactatttcatcgcagtttttaaggatttggacgatcgagagaaagattccgtcgagcat
attagattcgattgtaatcaactgatttatgaagtttttgaaccgttcctccgtatccga
ggccttaccatcaatgatgtggaattcttcctcgagaagagctcaaccccgattccagaa
aactcgggagcacgcttcctggctggccagagaattttcgttagaggtatgttttcaatg
ttgattttaaccataaattgtataagttgttcgacttcttcaaggtattctccttcctct
ttcattctaaaactcctacacaaaattgctcaaataactcacaaaaaaaaacgcatggca
aacacaagacagacgggggtgttcgacacctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAAAACAGTCGTCGTTCCATCGGG 399 253 25 Antisense
GAGGCGAGCATTCGTATCAGGTCCC 22 407 64 Antisense
GAATCGCATTCATCACATTGACATC 498 329 105 Antisense
TGACATCGATCCACCGCAGATCAAC 366 571 123 Antisense
TATCCGAGGCCTTACCATCAATGAT 593 655 258 Antisense
CTCAACCCCGATTCCAGAAAACTCG 525 227 306 Antisense
CAGAAAACTCGGGAGCACGCTTCCT 79 205 320 Antisense
CACGCTTCCTGGCTGGCCAGAGAAT 209 201 335 Antisense
CTTCTTCAAGGTATTCTCCTTCCTC 118 221 419 Antisense
CTTCCTCTTTCATTCTAAAACTCCT 601 219 437 Antisense
CAGACGGGGGTGTTCGACACCTCTG 45 187 514 Antisense
Sequence Source Affymetrix Proprietary Database