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[181673_at]

Description F56D2.8 /REP_DB=WormBase Gene ID /WP=CE11236 /TR=O01420 /GB=AAB52684.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 38.1
(3)
A 		12.6
(-1.7)
A 		5.4
(-3)
A 		27
(1)
A 		33
B 65.3
(3)
P 		55.3
(2)
A 		4.7
(-3)
A 		11
(-2.4)
A 		61
C 35.6
(2.5)
A 		33.6
(2.1)
A 		7
(-3)
A 		38.1
(3)
A 		31
avr 46.3
(3) 		33.8
(1.2) 		5.7
(-3) 		25.4
(-0.1) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 39.3
(3)
A 		23.1
(-0.7)
A 		33.5
(1.7)
A 		27.7
(0.4)
A 		12.7
(-3)
A 		25.5
(-0.1)
A 		27
B 47.7
(3)
A 		34.2
(0.9)
A 		8.2
(-3)
A 		21.6
(-1)
A 		39.7
(1.8)
A 		17.7
(-1.6)
A 		40
C 35.4
(1.4)
M 		46.7
(3)
A 		4.6
(-3)
A 		43.2
(2.5)
A 		15.1
(-1.5)
A 		29.5
(0.5)
A 		42
avr 40.8
(3) 		34.7
(1.6) 		15.4
(-3) 		30.8
(0.6) 		22.5
(-1.3) 		24.2
(-0.9) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 13.9
(3)
A 		2.7
(-2.4)
A 		1.4
(-3)
A 		3.9
(-1.8)
A 		13
B 20.8
(3)
P 		13.6
(0.8)
A 		1.1
(-3)
A 		2.3
(-2.6)
A 		20
C 11.8
(3)
A 		9.7
(1.7)
A 		2.4
(-3)
A 		6.4
(-0.4)
A 		9
avr 15.5
(3) 		8.7
(0.1) 		1.6
(-3) 		4.2
(-1.9) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.3
(1.8)
A 		8.2
(3)
A 		7.3
(1.8)
A 		7
(1.4)
A 		3.8
(-3)
A 		6.2
(0.3)
A 		4
B 16.6
(3)
A 		11.4
(0.9)
A 		2
(-3)
A 		5.7
(-1.5)
A 		16.1
(2.8)
A 		6.6
(-1.1)
A 		15
C 13.1
(2.5)
M 		14.2
(3)
A 		1.2
(-3)
A 		8.7
(0.5)
A 		4.9
(-1.3)
A 		9.9
(1)
A 		13
avr 12.3
(3) 		11.3
(2.3) 		3.5
(-3) 		7.1
(-0.5) 		8.3
(0.3) 		7.6
(-0.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181673_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7309
Sequence Type Exemplar sequence
Representative Public ID F56D2.8 NCBI
Target Description F56D2.8 /REP_DB=WormBase Gene ID /WP=CE11236 /TR=O01420 /GB=AAB52684.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065796(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065796 NCBI Caenorhabditis elegans F56D2.8 (F56D2.8) mRNA, complete cds. 11/11 None
GENEFINDER00000013296 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5581598:5582364:-1 10/11 None
SNAP00000013286 ENSEMBL cdna:SNAP chromosome:CEL140:III:5581841:5582364:-1 10/11 None
F56D2.8 ENSEMBL cdna:known chromosome:CEL140:III:5581535:5582364:-1 gene:F56D2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5581502-5582363(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56D2.8
Entrez Gene 186379 Entrez gene
SwissProt O01420 EMBL-EBI
WormBase CE31006 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52684 Hypothetical protein F56D2.8 [Caenorhabditis elegans] ref|NP_498197.2| F56D2.8 [Caenorhabditis elegans] 2.0E-72
blast AAB52684 Hypothetical protein F56D2.8 [Caenorhabditis elegans] ref|NP_498197.2| F56D2.8 [Caenorhabditis elegans] 1.0E-60
blast AAB52684 Hypothetical protein F56D2.8 [Caenorhabditis elegans] ref|NP_498197.2| F56D2.8 [Caenorhabditis elegans] 5.0E-55
Sequence
Target Sequence 
>C. ELEGANS:181673_AT
ttctagctctttcaagtgcttctattgtcttttcattggatccagtccccgaagaatatg
ccaacgtaccgaaggagttcttcgaaaagttccaggcagctatcaaatcaggggacccag
ttgcagtagtggatctttttgctccggatgatatgcttcctgtcagtggcatgattgaag
cggcacagggaatcatcaaatcttttgaatcttatccgaccggaataattgaacgagttc
gctacgagtatggagtcattcagattaatgtcagatattaccccaacacgccccttttgt
ccaaaaaaacgactattttcaagataaaatacgaggtaatcagggaaacaaatggaaagg
ctggacaatggtgcacttcagtgattggatgtagtttcatattcgaatatcgggacttat
attcacaaaacgcagtaaacgagaagagtcgactttctggaagttttcccttttcacatg
att

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTAGCTCTTTCAAGTGCTTCTAT 308 691 32 Antisense
GTGCTTCTATTGTCTTTTCATTGGA 47 481 47 Antisense
GGATCCAGTCCCCGAAGAATATGCC 333 513 69 Antisense
GGCAGCTATCAAATCAGGGGACCCA 437 535 126 Antisense
GGGGACCCAGTTGCAGTAGTGGATC 596 497 142 Antisense
GTAGTGGATCTTTTTGCTCCGGATG 623 455 157 Antisense
GCTCCGGATGATATGCTTCCTGTCA 125 299 172 Antisense
GCTTCCTGTCAGTGGCATGATTGAA 198 307 186 Antisense
ATCTTTTGAATCTTATCCGACCGGA 516 27 231 Antisense
GAAAGGCTGGACAATGGTGCACTTC 87 361 386 Antisense
GGAAGTTTTCCCTTTTCACATGATT 453 531 490 Antisense
Sequence Source Affymetrix Proprietary Database