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[181671_s_at]

Description F56C9.7 /REP_DB=WormBase Gene ID /WP=CE01326 /TR=Q20865 /GB=AAK18962.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 32      4grp_highest_8_8 > 33      4grp_high_8_8 > 51      6grp_highest_nonorm > 25      6grp_total > 31      4grp_total > 60      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4388
1 2 3 4 range
A 3549
(2.4)
P 		3560.5
(2.4)
P 		3886
(3)
P 		679.2
(-3)
P 		3207
B 4060.1
(2.7)
P 		4227.7
(3)
P 		4093.1
(2.8)
P 		674.2
(-3)
P 		3554
C 5050.5
(3)
P 		3548.1
(0.9)
P 		3912.2
(1.4)
P 		662.5
(-3)
P 		4388
avr 4219.9
(3) 		3778.8
(2.3) 		3963.8
(2.6) 		672
(-3) 		3548

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5312
1 2 3 4 5 6 range
A 3411.6
(-1.4)
P 		3972.9
(-0.8)
P 		7308.7
(3)
P 		4311.8
(-0.4)
P 		2719.8
(-2.2)
P 		1997
(-3)
P 		5312
B 3406.6
(-1.2)
P 		5685.1
(3)
P 		4428.1
(0.7)
P 		3967.3
(-0.2)
P 		3700.2
(-0.7)
P 		2460.4
(-3)
P 		3225
C 4306.5
(1.1)
P 		5129.8
(3)
P 		4086.8
(0.5)
P 		3826.4
(-0.1)
P 		2580.7
(-3)
P 		2691.3
(-2.7)
P 		2549
avr 3708.2
(-0.3) 		4929.3
(2.3) 		5274.5
(3) 		4035.2
(0.4) 		3000.2
(-1.7) 		2382.9
(-3) 		2892
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1573
1 2 3 4 range
A 1292.2
(3)
P 		772.9
(0.4)
P 		1015.9
(1.6)
P 		99.4
(-3)
P 		1193
B 1294.7
(3)
P 		1044.1
(1.7)
P 		948.5
(1.2)
P 		143.7
(-3)
P 		1151
C 1671.9
(3)
P 		1020.1
(0.5)
P 		1363.5
(1.8)
P 		111.7
(-3)
P 		1560
avr 1419.6
(3) 		945.7
(0.8) 		1109.3
(1.6) 		118.3
(-3) 		1301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1406
1 2 3 4 5 6 range
A 628.9
(-2.2)
P 		1413
(2)
P 		1591.7
(3)
P 		1093.6
(0.3)
P 		820.7
(-1.2)
P 		486.2
(-3)
P 		1106
B 1185.3
(-1.4)
P 		1892.3
(3)
P 		1075.3
(-2)
P 		1050.8
(-2.2)
P 		1503.3
(0.6)
P 		917.5
(-3)
P 		975
C 1596.2
(3)
P 		1565.2
(2.8)
P 		1040.2
(-1)
P 		769.5
(-3)
P 		835.1
(-2.5)
P 		900.9
(-2)
P 		827
avr 1136.8
(-0.4) 		1623.5
(3) 		1235.7
(0.3) 		971.3
(-1.6) 		1053
(-1) 		768.2
(-3) 		855
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181671_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7347
Sequence Type Exemplar sequence
Representative Public ID F56C9.7 NCBI
Target Description F56C9.7 /REP_DB=WormBase Gene ID /WP=CE01326 /TR=Q20865 /GB=AAK18962.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066211(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066211 NCBI Caenorhabditis elegans F56C9.7 (F56C9.7) mRNA, complete cds. 11/11 A 
SNAP00000032852 ENSEMBL cdna:SNAP chromosome:CEL140:III:7313131:7314897:-1 11/11 None
GENEFINDER00000032872 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7313131:7314897:-1 11/11 None
F56C9.7.1 ENSEMBL cdna:known chromosome:CEL140:III:7313065:7314901:-1 gene:F56C9.7 11/11 None
F56C9.7.2 ENSEMBL cdna:known chromosome:CEL140:III:7313131:7314899:-1 gene:F56C9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7313128-7314895(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56C9.7
Entrez Gene 176037 Entrez gene
SwissProt Q20865 EMBL-EBI
WormBase CE01326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18962 Hypothetical protein F56C9.7 [Caenorhabditis elegans] ref|NP_498612.1| F56C9.7 [Caenorhabditis elegans] 1.0E-140
blast CAE57622 Hypothetical protein CBG00605 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 6.2E-66
Sequence
Target Sequence 
>C. ELEGANS:181671_S_AT
atttctcagttgctggaccaagtaatttggcaattggaacgtgtaatagtgtaccatttg
catctgctcaggctggatttgcttcttccgttggtcttgctccaacaactacttggcgtg
aagccaacattctcaccaatgcgacaatcggaatgattgatcaaggaatggatcaattgg
ctgcggtttgtcaagctcgtcagcaattcgttcaaactcttggtgccgcctatgatactt
gtacagatcgtttctatttgatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTCAGTTGCTGGACCAAGTAA 210 17 128 Antisense
ATAGTGTACCATTTGCATCTGCTCA 651 21 173 Antisense
GCATCTGCTCAGGCTGGATTTGCTT 669 309 187 Antisense
TCTTCCGTTGGTCTTGCTCCAACAA 439 613 211 Antisense
TGCTCCAACAACTACTTGGCGTGAA 609 581 225 Antisense
GGCGTGAAGCCAACATTCTCACCAA 580 541 242 Antisense
ATTCTCACCAATGCGACAATCGGAA 271 11 256 Antisense
ATGGATCAATTGGCTGCGGTTTGTC 691 51 295 Antisense
GCAATTCGTTCAAACTCTTGGTGCC 7 323 330 Antisense
TGCCGCCTATGATACTTGTACAGAT 351 585 351 Antisense
GTACAGATCGTTTCTATTTGATTTC 399 461 368 Antisense
Sequence Source Affymetrix Proprietary Database