[Home] | [Total List]

[181669_at]

Description K02F6.2 /REP_DB=WormBase Gene ID /WP=CE11658 /TR=O16634 /GB=AAB66102.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 20      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 10.2
(0.2)
A 		11.2
(0.9)
A 		5.3
(-3)
A 		14.4
(3)
A 		9
B 9.7
(1.6)
A 		10.9
(3)
A 		5.8
(-2.9)
A 		5.7
(-3)
A 		5
C 10
(-2.4)
A 		11.1
(-2)
A 		8.5
(-3)
A 		24
(3)
A 		16
avr 10
(-0.4) 		11.1
(0.4) 		6.5
(-3) 		14.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 12.8
(-2.5)
A 		9.2
(-2.8)
A 		6.6
(-3)
A 		16.8
(-2.2)
A 		11.6
(-2.6)
A 		81.1
(3)
A 		75
B 5.2
(-3)
A 		13
(-2.2)
A 		6.3
(-2.9)
A 		8.9
(-2.6)
A 		58
(2.7)
A 		60.5
(3)
A 		55
C 8.3
(-3)
A 		14
(-2.2)
A 		17.5
(-1.8)
A 		9.5
(-2.8)
A 		10.1
(-2.8)
A 		52.6
(3)
A 		44
avr 8.8
(-3) 		12.1
(-2.6) 		10.1
(-2.9) 		11.7
(-2.7) 		26.6
(-1.1) 		64.7
(3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.7
(3)
A 		2.4
(-0.4)
A 		1.4
(-3)
A 		2.1
(-1.2)
A 		2
B 3.1
(3)
A 		2.7
(1.7)
A 		1.3
(-2.7)
A 		1.2
(-3)
A 		2
C 3.3
(-1.2)
A 		3.2
(-1.8)
A 		3
(-3)
A 		4
(3)
A 		1
avr 3.4
(3) 		2.8
(0.6) 		1.9
(-3) 		2.4
(-1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.4
(-2.7)
A 		3.3
(-2.4)
A 		1.4
(-3)
A 		4.3
(-2)
A 		3.5
(-2.3)
A 		19.7
(3)
A 		18
B 1.8
(-2.9)
A 		4.3
(-2.2)
A 		1.5
(-3)
A 		2.4
(-2.8)
A 		23.6
(3)
A 		22.6
(2.7)
A 		22
C 3.1
(-2.5)
A 		4.3
(-2.1)
A 		4.5
(-2)
A 		1.9
(-3)
A 		3.3
(-2.5)
A 		17.6
(3)
A 		16
avr 2.4
(-3) 		4
(-2.5) 		2.5
(-3) 		2.9
(-2.8) 		10.1
(-0.4) 		20
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181669_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5261
Sequence Type Exemplar sequence
Representative Public ID K02F6.2 NCBI
Target Description K02F6.2 /REP_DB=WormBase Gene ID /WP=CE11658 /TR=O16634 /GB=AAB66102.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061894(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061894 NCBI Caenorhabditis elegans K02F6.2 (K02F6.2) mRNA, complete cds. 11/11 None
SNAP00000019493 ENSEMBL cdna:SNAP chromosome:CEL140:II:2545115:2553506:1 11/11 None
GENEFINDER00000019504 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2546290:2553813:1 11/11 None
K02F6.2 ENSEMBL cdna:known chromosome:CEL140:II:2552200:2553506:1 gene:K02F6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2552198-2553505(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02F6.2
Entrez Gene 173605 Entrez gene
SwissProt O16634 EMBL-EBI
WormBase CE35988 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66102 Hypothetical protein K02F6.2 [Caenorhabditis elegans] ref|NP_494295.2| K02F6.2 [Caenorhabditis elegans] 0.0
blast AAB66103 Hypothetical protein K02F6.3 [Caenorhabditis elegans] ref|NP_494294.2| K02F6.3 [Caenorhabditis elegans] 0.0
blast AAB66104 Hypothetical protein K02F6.4 [Caenorhabditis elegans] ref|NP_494293.1| K02F6.4 [Caenorhabditis elegans] 0.0
blast AAB66102 Hypothetical protein K02F6.2 [Caenorhabditis elegans] ref|NP_494295.2| K02F6.2 [Caenorhabditis elegans] 1.0E-178
blast AAB66102 Hypothetical protein K02F6.2 [Caenorhabditis elegans] ref|NP_494295.2| K02F6.2 [Caenorhabditis elegans] 1.0E-162
blast AAB66104 Hypothetical protein K02F6.4 [Caenorhabditis elegans] ref|NP_494293.1| K02F6.4 [Caenorhabditis elegans] 2.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.0012
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.2E-27
Pfam IPR002110 EMBL-EBI Ankyrin 0.11
Pfam IPR002110 EMBL-EBI Ankyrin 9.9E-9
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.2E-27
Pfam IPR002110 EMBL-EBI Ankyrin 0.11
Pfam IPR002110 EMBL-EBI Ankyrin 9.9E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000019493 1 783-805
GENEFINDER00000019504 1 789-811
Sequence
Target Sequence 
>C. ELEGANS:181669_AT
tgccgacagattcatcgacacgtccaggagagccgaattccctatttgaccggcgttaaa
gtgcatcttcacttgttcaagaaaatcaagaaagatttgtcaaagttcatcaaggacctt
ctttctgaattgggatgttttgtttacacaaccggtacactgccgcatttgctggatcca
gattatgctgcaacgaacgataagaactttccatccatgtaccatcgagatgatatcggt
ccacacatcattgtcactccttcagaagatctggcaagtctttggaaaaaatgcgacttt
gtgttccataacaaccgtttcttgatcgtatcgcccactgaactcatcgagttccttttc
gaattcaaaattaaccactataagattactggcaaaaaagagaagacttgtattgagaaa
tgggattcagtagatcaaaatatcgctactcgaaagaaacaaaagaaaccgaccgagaaa
cttgaccgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGACAGATTCATCGACACGTCC 591 583 496 Antisense
GGAGAGCCGAATTCCCTATTTGACC 563 513 522 Antisense
GACCGGCGTTAAAGTGCATCTTCAC 695 381 543 Antisense
CATCAAGGACCTTCTTTCTGAATTG 645 213 603 Antisense
TTTACACAACCGGTACACTGCCGCA 604 661 638 Antisense
CTTTCCATCCATGTACCATCGAGAT 287 223 702 Antisense
GATATCGGTCCACACATCATTGTCA 626 425 727 Antisense
ATCATTGTCACTCCTTCAGAAGATC 24 31 742 Antisense
ACAACCGTTTCTTGATCGTATCGCC 140 111 806 Antisense
TATCGCCCACTGAACTCATCGAGTT 146 659 824 Antisense
AACCGACCGAGAAACTTGACCGCAT 145 143 962 Antisense
Sequence Source Affymetrix Proprietary Database