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[181666_at]

Description F31D5.5 /REP_DB=WormBase Gene ID /WP=CE02710 /TR=Q19931 /GB=AAC71101.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 10      6grp_total > 33      4grp_total > 53      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 215.1
(3)
P 		162
(0.8)
P 		166.1
(0.9)
P 		72.2
(-3)
A 		143
B 269.1
(3)
P 		204.3
(1.3)
P 		140
(-0.3)
P 		35
(-3)
A 		234
C 209.1
(3)
P 		162.5
(1.2)
P 		143.5
(0.5)
P 		54.2
(-3)
A 		155
avr 231.1
(3) 		176.3
(1.1) 		149.9
(0.3) 		53.8
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 139.5
(3)
P 		58.1
(-3)
P 		85
(-1)
M 		65.9
(-2.4)
A 		68.8
(-2.2)
P 		75.5
(-1.7)
A 		81
B 93
(1.9)
P 		76.7
(0.3)
P 		98.3
(2.4)
P 		43.3
(-3)
A 		104.1
(3)
P 		64.6
(-0.9)
M 		61
C 125
(2.4)
P 		96.2
(0.1)
P 		132.5
(3)
P 		115.9
(1.7)
P 		91.4
(-0.3)
M 		58.1
(-3)
P 		74
avr 119.2
(3) 		77
(-1.8) 		105.3
(1.4) 		75
(-2) 		88.1
(-0.5) 		66.1
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 78.3
(3)
P 		35.2
(-0.8)
P 		43.4
(-0.1)
P 		10.6
(-3)
A 		68
B 85.8
(3)
P 		50.5
(0.3)
P 		32.4
(-1.1)
P 		7.5
(-3)
A 		78
C 69.2
(3)
P 		46.7
(0.8)
P 		50
(1.1)
P 		9.1
(-3)
A 		60
avr 77.8
(3) 		44.1
(0.1) 		41.9
(-0.1) 		9.1
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 25.7
(3)
P 		20.6
(-0.4)
P 		18.5
(-1.8)
M 		16.7
(-3)
A 		20.8
(-0.3)
P 		18.4
(-1.9)
A 		9
B 32.4
(1.1)
P 		25.5
(-0.3)
P 		23.9
(-0.6)
P 		11.5
(-3)
A 		42.3
(3)
P 		24.1
(-0.5)
M 		31
C 46.3
(3)
P 		29.4
(-0.8)
P 		33.7
(0.2)
P 		23.3
(-2.1)
P 		29.6
(-0.7)
M 		19.4
(-3)
P 		27
avr 34.8
(3) 		25.2
(-0.3) 		25.4
(-0.2) 		17.2
(-3) 		30.9
(1.7) 		20.6
(-1.8) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181666_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4767
Sequence Type Exemplar sequence
Representative Public ID F31D5.5 NCBI
Target Description F31D5.5 /REP_DB=WormBase Gene ID /WP=CE02710 /TR=Q19931 /GB=AAC71101.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062338 NCBI Caenorhabditis elegans F31D5.5 (F31D5.5) mRNA, complete cds. 11/11 None
SNAP00000018589 ENSEMBL cdna:SNAP chromosome:CEL140:II:4195024:4203745:-1 11/11 None
GENEFINDER00000018598 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4195024:4204141:-1 11/11 None
F31D5.5 ENSEMBL cdna:known chromosome:CEL140:II:4194954:4204141:-1 gene:F31D5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4195022-4204140(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31D5.5
Entrez Gene 185152 Entrez gene
SwissProt Q19931 EMBL-EBI
WormBase CE37368 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7218 neuropeptide signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC71101 Hypothetical protein F31D5.5 [Caenorhabditis elegans] ref|NP_494739.2| F31D5.5 [Caenorhabditis elegans] 0.0
blast AAQ84881 methuselah-like protein MTH-1 [Caenorhabditis elegans] 0.0
blast CAE74279 Hypothetical protein CBG21974 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000203 EMBL-EBI GPS domain 1.7E-17
Pfam IPR000203 EMBL-EBI GPS domain 1.7E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494739.2 7 1494-1516,1536-1558,1573-1595,1608-1637,1657-1679,1708-1730,1734-1756
F31D5.5 7 1494-1516,1536-1558,1573-1595,1608-1637,1657-1679,1708-1730,1734-1756
SNAP00000018589 7 1463-1485,1505-1527,1542-1564,1577-1606,1626-1648,1677-1699,1703-1725
GENEFINDER00000018598 7 1494-1516,1536-1558,1573-1595,1608-1637,1657-1679,1708-1730,1734-1756
Sequence
Target Sequence 
>C. ELEGANS:181666_AT
tgatgagcatgctgattggcctccgcatggtttgccacttcttttctccaaaacttcgtt
tattcttcggagtcatgacttccccgccagctgctttaagcatcggactaatcgttccat
tcacttttacccttatactagccctagtggacacctcattcttcaaacgagacgactgtt
tctgttgggtacgtcccgactacatagtctatgccgttgtgataccagttgtgttgccga
tcatcaatggtgttatttgctcaagtttcgcaatctataaaatgttcttccaagcgaagc
ggggattggcgagtaaggagacttcacattatgatgcagagttttggtcgaaagttatgg
gtctgattatcatgcaagtagctatgggattaccttggggaatcgagttcattctaatcg
gtgttgcgggtccaagtccatggaattatatatttgttttactactgggtactcagggaa
tcgacctattcctaatattcctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGAGCATGCTGATTGGCCTCCG 668 565 4862 Antisense
ATTCTTCGGAGTCATGACTTCCCCG 617 9 4923 Antisense
CCCGCCAGCTGCTTTAAGCATCGGA 412 261 4944 Antisense
GACTAATCGTTCCATTCACTTTTAC 494 371 4967 Antisense
TTTTACCCTTATACTAGCCCTAGTG 18 673 4986 Antisense
GTGGACACCTCATTCTTCAAACGAG 57 491 5008 Antisense
TTCTGTTGGGTACGTCCCGACTACA 17 693 5041 Antisense
AGTCTATGCCGTTGTGATACCAGTT 636 59 5067 Antisense
GATACCAGTTGTGTTGCCGATCATC 255 425 5082 Antisense
ATTCTAATCGGTGTTGCGGGTCCAA 204 1 5272 Antisense
ATCGACCTATTCCTAATATTCCTAT 208 37 5341 Antisense
Sequence Source Affymetrix Proprietary Database