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[181665_at]

Description Y37D8A.6 /REP_DB=WormBase Gene ID /WP=CE20211 /TR=Q9XWW3 /GB=CAA21526.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 87      6grp_total > 69      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1412
1 2 3 4 range
A 1019.7
(-1.8)
P 		752.4
(-3)
P 		785.5
(-2.9)
P 		2124
(3)
P 		1372
B 1079.5
(-1.6)
P 		864.7
(-2.6)
P 		792.5
(-3)
P 		2023.3
(3)
P 		1231
C 1009.7
(-1.7)
P 		712.4
(-3)
P 		724
(-2.9)
P 		2087.1
(3)
P 		1375
avr 1036.3
(-1.8) 		776.5
(-3) 		767.3
(-3) 		2078.1
(3) 		1311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 741
1 2 3 4 5 6 range
A 1133.4
(-0.6)
P 		993.7
(-1.9)
P 		874.4
(-3)
P 		947.8
(-2.3)
P 		1013.3
(-1.7)
P 		1521
(3)
P 		647
B 1108.5
(-1.5)
P 		963.3
(-3)
P 		984.5
(-2.8)
P 		993.2
(-2.7)
P 		1261.8
(0)
P 		1556.3
(3)
P 		593
C 1124.8
(-0.9)
P 		900.8
(-2.7)
P 		868.5
(-3)
P 		921.5
(-2.6)
P 		1305.6
(0.5)
P 		1609.7
(3)
P 		741
avr 1122.2
(-1) 		952.6
(-2.6) 		909.1
(-3) 		954.2
(-2.6) 		1193.6
(-0.4) 		1562.3
(3) 		653
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 371.3
(3)
P 		163.3
(-3)
P 		205.3
(-1.8)
P 		310.9
(1.3)
P 		208
B 344.3
(0.9)
P 		213.6
(-2.3)
P 		183.6
(-3)
P 		431.2
(3)
P 		248
C 334.2
(2.3)
P 		204.8
(-3)
P 		252.3
(-1.1)
P 		351.9
(3)
P 		147
avr 349.9
(2.5) 		193.9
(-3) 		213.7
(-2.3) 		364.7
(3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 208.9
(-2.4)
P 		353.4
(2.4)
P 		190.4
(-3)
P 		240.4
(-1.3)
P 		305.8
(0.8)
P 		370.3
(3)
P 		180
B 385.7
(-0.4)
P 		320.6
(-1.6)
P 		239.1
(-3)
P 		263.1
(-2.6)
P 		512.7
(1.8)
P 		580.3
(3)
P 		341
C 416.9
(0.9)
P 		274.9
(-1.5)
P 		221.1
(-2.4)
P 		185.3
(-3)
P 		422.5
(1)
P 		538.8
(3)
P 		354
avr 337.2
(-0.4) 		316.3
(-0.9) 		216.9
(-3) 		229.6
(-2.7) 		413.7
(1.2) 		496.5
(3) 		280
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181665_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8092
Sequence Type Exemplar sequence
Representative Public ID Y37D8A.6 NCBI
Target Description Y37D8A.6 /REP_DB=WormBase Gene ID /WP=CE20211 /TR=Q9XWW3 /GB=CAA21526.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067271(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067271 NCBI Caenorhabditis elegans Y37D8A.6 (Y37D8A.6) mRNA, complete cds. 11/11 None
SNAP00000028774 ENSEMBL cdna:SNAP chromosome:CEL140:III:12856825:12860103:-1 11/11 None
GENEFINDER00000028809 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12856825:12857769:-1 11/11 None
Y37D8A.6 ENSEMBL cdna:known chromosome:CEL140:III:12856825:12857769:-1 gene:Y37D8A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12856820-12857765(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37D8A.6
Entrez Gene 189614 Entrez gene
SwissProt Q9XWW3 EMBL-EBI
WormBase CE20211 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21526 Hypothetical protein Y37D8A.6 [Caenorhabditis elegans] ref|NP_499672.1| Y37D8A.6 [Caenorhabditis elegans] 3.0E-29
blast CAE69541 Hypothetical protein CBG15750 [Caenorhabditis briggsae] 1.0E-18
blast CAE62305 Hypothetical protein CBG06367 [Caenorhabditis briggsae] 2.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499672.1 1 91-113
Y37D8A.6 1 91-113
SNAP00000028774 1 109-131
GENEFINDER00000028809 1 91-113
Sequence
Target Sequence 
>C. ELEGANS:181665_AT
catacgctgaagcacagcagccgccaccaacaattatttatccaccaacacaaatgccac
aacagggaccgggacagggaccggtctatgtggttcaacaaccgcaggaaattatcatcg
tcggcacaaaaatggctccatccttcgagccgtacaccgagttctgtcctcgttgtaata
caaatgtatgcaccagagtcgagcgtacaatgggcttctgctcatggacaatgctcttcc
ttgggctcttcgtgttcttcccacttctgtgctgcttctgccttgacggattcaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATACGCTGAAGCACAGCAGCCGCC 163 213 59 Antisense
AGCCGCCACCAACAATTATTTATCC 359 1 77 Antisense
ATGCCACAACAGGGACCGGGACAGG 390 41 112 Antisense
GACAGGGACCGGTCTATGTGGTTCA 175 369 131 Antisense
GCAGGAAATTATCATCGTCGGCACA 631 309 162 Antisense
GTCGGCACAAAAATGGCTCCATCCT 209 473 178 Antisense
TACACCGAGTTCTGTCCTCGTTGTA 416 641 211 Antisense
GTATGCACCAGAGTCGAGCGTACAA 580 455 244 Antisense
GTACAATGGGCTTCTGCTCATGGAC 428 461 263 Antisense
GCTCATGGACAATGCTCTTCCTTGG 172 301 278 Antisense
TGCTTCTGCCTTGACGGATTCAAAG 225 579 331 Antisense
Sequence Source Affymetrix Proprietary Database