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[181664_at]

Description R07E4.1 /REP_DB=WormBase Gene ID /WP=CE04816 /TR=Q21819 /GB=AAA80400.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 46      6grp_total > 37      4grp_total > 46      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 257.9
(3)
P 		138.7
(-1.4)
P 		93.8
(-3)
P 		99.8
(-2.8)
M 		164
B 253.8
(3)
P 		141.6
(-2)
P 		118.2
(-3)
P 		118.9
(-3)
M 		136
C 229.9
(3)
P 		117.8
(-2.5)
P 		107.7
(-3)
P 		114.2
(-2.7)
A 		122
avr 247.2
(3) 		132.7
(-1.9) 		106.6
(-3) 		111
(-2.8) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 185.5
(2.9)
P 		151.1
(0.4)
P 		105.3
(-3)
P 		142.4
(-0.3)
P 		116.3
(-2.2)
M 		186.7
(3)
P 		81
B 165.2
(3)
P 		156.6
(2.3)
P 		96
(-3)
P 		158
(2.4)
P 		134.9
(0.4)
P 		144.7
(1.2)
P 		69
C 176.2
(3)
P 		173.2
(2.8)
P 		160.3
(2)
P 		76.9
(-3)
A 		91.4
(-2.1)
P 		126.6
(0)
P 		99
avr 175.6
(3) 		160.3
(1.5) 		120.5
(-2.4) 		125.8
(-1.9) 		114.2
(-3) 		152.7
(0.8) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 93.9
(3)
P 		30.1
(-1.8)
P 		24.5
(-2.3)
P 		14.6
(-3)
M 		79
B 80.9
(3)
P 		35
(-2)
P 		27.4
(-2.8)
P 		25.3
(-3)
M 		56
C 76.1
(3)
P 		33.9
(-1.5)
P 		37.5
(-1.1)
P 		19.3
(-3)
A 		57
avr 83.6
(3) 		33
(-1.8) 		29.8
(-2.1) 		19.7
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 34.2
(-0.8)
P 		53.7
(3)
P 		22.9
(-3)
P 		36.1
(-0.4)
P 		35.1
(-0.6)
M 		45.5
(1.4)
P 		31
B 57.5
(3)
P 		52.1
(2.1)
P 		23.3
(-3)
P 		41.8
(0.2)
P 		54.8
(2.5)
P 		53.9
(2.4)
P 		34
C 65.3
(3)
P 		52.8
(1.5)
P 		40.8
(0)
P 		15.5
(-3)
A 		29.6
(-1.3)
P 		42.4
(0.2)
P 		50
avr 52.3
(2.8) 		52.9
(3) 		29
(-3) 		31.1
(-2.5) 		39.8
(-0.3) 		47.3
(1.6) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181664_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16922
Sequence Type Exemplar sequence
Representative Public ID R07E4.1 NCBI
Target Description R07E4.1 /REP_DB=WormBase Gene ID /WP=CE04816 /TR=Q21819 /GB=AAA80400.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029668(11), NM_001029669(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029668 NCBI Caenorhabditis elegans R07E4.1a (R07E4.1) mRNA, complete cds. 11/11 None
NM_001029669 NCBI Caenorhabditis elegans R07E4.1b (R07E4.1) mRNA, complete cds. 11/11 None
GENEFINDER00000014995 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5961180:5969896:1 11/11 None
SNAP00000014987 ENSEMBL cdna:SNAP chromosome:CEL140:X:5963359:5969896:1 11/11 None
R07E4.1a ENSEMBL cdna:known chromosome:CEL140:X:5959073:5970116:1 gene:R07E4.1 11/11 None
R07E4.1b ENSEMBL cdna:known chromosome:CEL140:X:5963359:5969896:1 gene:R07E4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5966882-5969896(+) 100.0 100.0
Public Domain and Genome References
Ensembl R07E4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024839 R07E4.1a [Caenorhabditis elegans] gb|AAV28337.1| Hypothetical protein R07E4.1a [Caenorhabditis elegans] 0.0
blast NP_001024840 R07E4.1b [Caenorhabditis elegans] gb|AAV28338.1| Hypothetical protein R07E4.1b [Caenorhabditis elegans] 0.0
blast T16700 hypothetical protein R07E4.1 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:181664_AT
gactagcgtctcgagatggatcggatacggaagatgaatatgaatttgtgatgagtaacg
atccaaacccaagaaacaatggatttttgaaatcagatcaaccaaggtctgcacttaact
ctccacaacagagttatcgggacattgacagtgtatatcgacgaagacgtaaagtttcca
ctgatttggctctggcactcagcaacaccagtctcaataatttgaacgggattgaagaaa
aaaacctgactcctgaccgaccacaaatcaaagaggacaaaatattcttagaatccataa
atgttatggttgggtacgactgtcagattccgaaaggaacaaaaattgcactttcggtaa
cacagagtacagaagctggagaggttgtaaactttgtgattgaacaaattgctaaatcgg
ctgctggcattgataatgaaataacactcaacgacagttcagagttatgcttggtagcag
catttgggcaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTAGCGTCTCGAGATGGATCGGA 496 373 1484 Antisense
ATGAGTAACGATCCAAACCCAAGAA 405 45 1534 Antisense
CAACCAAGGTCTGCACTTAACTCTC 667 185 1582 Antisense
GTTTCCACTGATTTGGCTCTGGCAC 500 451 1657 Antisense
CACTCAGCAACACCAGTCTCAATAA 16 199 1679 Antisense
ACTCCTGACCGACCACAAATCAAAG 556 99 1732 Antisense
GTTGGGTACGACTGTCAGATTCCGA 64 435 1792 Antisense
TTGCACTTTCGGTAACACAGAGTAC 325 701 1829 Antisense
TTGCTAAATCGGCTGCTGGCATTGA 467 673 1892 Antisense
ACGACAGTTCAGAGTTATGCTTGGT 80 93 1934 Antisense
GCTTGGTAGCAGCATTTGGGCAACG 379 307 1952 Antisense
Sequence Source Affymetrix Proprietary Database