[Home] | [Total List]

[181663_at]

Description T06H11.2 /REP_DB=WormBase Gene ID /WP=CE02332 /TR=Q22272 /GB=CAA90067.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 5.9
(-3)
A 		65.5
(3)
A 		10.1
(-2.6)
A 		26.4
(-0.9)
A 		60
B 10.4
(1.5)
A 		4.2
(-2.9)
A 		4.1
(-3)
A 		12.5
(3)
A 		8
C 6.4
(-2.1)
A 		3.9
(-3)
A 		5.9
(-2.3)
A 		21.2
(3)
A 		17
avr 7.6
(-2.7) 		24.5
(3) 		6.7
(-3) 		20
(1.5) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 35.9
(3)
A 		9.2
(-2.2)
A 		26.6
(1.2)
A 		5.4
(-2.9)
A 		10.7
(-1.9)
A 		4.8
(-3)
A 		31
B 20.3
(0.6)
A 		31.5
(3)
A 		3.4
(-3)
A 		17.1
(-0.1)
A 		4.4
(-2.8)
A 		24.9
(1.6)
A 		28
C 9.5
(-1.9)
A 		40
(3)
A 		12
(-1.5)
A 		8.5
(-2.1)
A 		2.9
(-3)
A 		17.4
(-0.7)
A 		37
avr 21.9
(1.6) 		26.9
(3) 		14
(-0.7) 		10.3
(-1.8) 		6
(-3) 		15.7
(-0.2) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.1
(-3)
A 		14.2
(3)
A 		2.6
(-2.8)
A 		3.9
(-2.1)
A 		12
B 3.3
(3)
A 		1
(-2.8)
A 		0.9
(-3)
A 		2.7
(1.5)
A 		2
C 2.1
(-0.6)
A 		1.1
(-3)
A 		2
(-0.8)
A 		3.6
(3)
A 		3
avr 2.5
(-1.8) 		5.4
(3) 		1.8
(-3) 		3.4
(-0.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.6
(3)
A 		3.3
(-0.7)
A 		5.8
(2.1)
A 		1.4
(-2.8)
A 		3.2
(-0.8)
A 		1.2
(-3)
A 		5
B 7.1
(0.9)
A 		10.5
(3)
A 		0.8
(-3)
A 		4.5
(-0.7)
A 		1.8
(-2.4)
A 		9.3
(2.3)
A 		10
C 3.5
(-1.6)
A 		12.2
(3)
A 		3.1
(-1.8)
A 		1.7
(-2.6)
A 		0.9
(-3)
A 		5.8
(-0.4)
A 		11
avr 5.7
(0.3) 		8.7
(3) 		3.2
(-1.9) 		2.5
(-2.6) 		2
(-3) 		5.4
(0) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181663_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17209
Sequence Type Exemplar sequence
Representative Public ID T06H11.2 NCBI
Target Description T06H11.2 /REP_DB=WormBase Gene ID /WP=CE02332 /TR=Q22272 /GB=CAA90067.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077298(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077298 NCBI Caenorhabditis elegans T06H11.2 (T06H11.2) mRNA, complete cds. 11/11 None
T06H11.2 ENSEMBL cdna:known chromosome:CEL140:X:10129517:10130196:-1 gene:T06H11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10129516-10130196(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06H11.2
Entrez Gene 188202 Entrez gene
SwissProt Q22272 EMBL-EBI
WormBase CE02332 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90067 Hypothetical protein T06H11.2 [Caenorhabditis elegans] ref|NP_509699.1| T06H11.2 [Caenorhabditis elegans] 9.0E-37
Sequence
Target Sequence 
>C. ELEGANS:181663_AT
cagccctccgttctgtcgagaacggtctcttccggacacgtccgcaaagtaacaggcctc
gtgcctactctatgctcccattgacatcgtcgatcagtcaagaagaggtatttcaggata
gaatagcgtttaagttatgctcaccaaaatcatgttttactatacttaagagacttgtcg
ta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCCCTCCGTTCTGTCGAGAACGG 576 201 23 Antisense
TGTCGAGAACGGTCTCTTCCGGACA 710 557 36 Antisense
TCTCTTCCGGACACGTCCGCAAAGT 640 595 48 Antisense
CACGTCCGCAAAGTAACAGGCCTCG 613 199 59 Antisense
AAAGTAACAGGCCTCGTGCCTACTC 535 121 68 Antisense
TGCTCCCATTGACATCGTCGATCAG 210 581 95 Antisense
ACATCGTCGATCAGTCAAGAAGAGG 636 105 106 Antisense
GAGGTATTTCAGGATAGAATAGCGT 167 401 127 Antisense
TAGCGTTTAAGTTATGCTCACCAAA 211 651 146 Antisense
ATGCTCACCAAAATCATGTTTTACT 593 41 159 Antisense
TACTATACTTAAGAGACTTGTCGTA 667 627 180 Antisense
Sequence Source Affymetrix Proprietary Database