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[181662_at] 7TM chemoreceptor, srx family

Description F40H7.8 /REP_DB=WormBase Gene ID /WP=CE10210 /TR=O17093 /GB=AAF39807.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 10      6grp_cgc > 81      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 11
(-0.9)
A 		5.1
(-3)
A 		17
(1.2)
A 		22.2
(3)
A 		17
B 15.5
(-1.9)
A 		14.2
(-2)
A 		5.4
(-3)
A 		59.6
(3)
A 		54
C 6
(-1.8)
A 		16.4
(3)
A 		3.4
(-3)
A 		7.8
(-1)
A 		13
avr 10.8
(-2.4) 		11.9
(-2.1) 		8.6
(-3) 		29.9
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 6.7
(-0.5)
A 		2.9
(-3)
A 		6.8
(-0.5)
A 		9.5
(1.3)
A 		6.5
(-0.7)
A 		12.2
(3)
A 		9
B 19.2
(-0.2)
A 		39.3
(3)
A 		39.1
(3)
A 		2.3
(-3)
A 		2.1
(-3)
A 		2.1
(-3)
A 		37
C 5.3
(-1.5)
A 		3.7
(-2.6)
A 		11.5
(3)
A 		11.3
(2.9)
A 		6.7
(-0.5)
A 		3.2
(-3)
A 		8
avr 10.4
(-0.7) 		15.3
(1.4) 		19.1
(3) 		7.7
(-1.9) 		5.1
(-3) 		5.8
(-2.7) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4
(2.3)
A 		1.1
(-3)
A 		4.4
(3)
A 		3.2
(0.8)
A 		3
B 4.9
(-1.1)
A 		3.5
(-1.8)
A 		1.2
(-3)
A 		12.7
(3)
A 		12
C 2
(-1.6)
A 		4.7
(3)
A 		1.2
(-3)
A 		1.3
(-2.8)
A 		4
avr 3.6
(-0.7) 		3.1
(-1.6) 		2.3
(-3) 		5.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.2
(-2.4)
A 		1
(-3)
A 		1.5
(-1.5)
A 		2.4
(1.2)
A 		2
(0)
A 		3
(3)
A 		2
B 6.7
(-0.1)
A 		13.1
(3)
A 		9.5
(1.3)
A 		0.6
(-3)
A 		0.9
(-2.9)
A 		0.8
(-2.9)
A 		13
C 2
(0)
A 		1.1
(-3)
A 		2.9
(3)
A 		2.3
(1)
A 		2.2
(0.7)
A 		1.1
(-3)
A 		2
avr 3.3
(-0.1) 		5.1
(3) 		4.6
(2.1) 		1.8
(-2.7) 		1.7
(-2.8) 		1.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181662_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4756
Sequence Type Exemplar sequence
Representative Public ID F40H7.8 NCBI
Target Description F40H7.8 /REP_DB=WormBase Gene ID /WP=CE10210 /TR=O17093 /GB=AAF39807.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062218
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000031714 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3698264:3701399:-1 None
F40H7.8 ENSEMBL cdna:known chromosome:CEL140:II:3699828:3701399:-1 gene:F40H7.8 None
NM_062218 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-105) (srx-105) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3700085-3701398(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-105
Ensembl F40H7.8
Entrez Gene 185584 Entrez gene
SwissProt O17093 EMBL-EBI
WormBase CE36438 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39807 Serpentine receptor, class x protein 105 [Caenorhabditis elegans] ref|NP_494619.2| Serpentine Receptor, class X family member (srx-105) [Caenorhabditis elegans] 1.0E-164
blast AAF39806 Serpentine receptor, class x protein 104 [Caenorhabditis elegans] ref|NP_494618.2| Serpentine Receptor, class X family member (srx-104) [Caenorhabditis elegans] 1.0E-128
blast AAF39807 Serpentine receptor, class x protein 105 [Caenorhabditis elegans] ref|NP_494619.2| Serpentine Receptor, class X family member (srx-105) [Caenorhabditis elegans] 1.0E-123
blast T32281 hypothetical protein F40H7.9 - Caenorhabditis elegans 1.0E-101
blast AAF39806 Serpentine receptor, class x protein 104 [Caenorhabditis elegans] ref|NP_494618.2| Serpentine Receptor, class X family member (srx-104) [Caenorhabditis elegans] 3.0E-91
blast T32281 hypothetical protein F40H7.9 - Caenorhabditis elegans 8.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494619.2 6 10-32,52-74,89-111,123-145,168-190,250-272
F40H7.8 6 10-32,52-74,89-111,123-145,168-190,250-272
GENEFINDER00000031714 10 10-32,53-75,116-138,198-220,262-284,304-326,341-363,375-397,427-449,470-492
Sequence
Target Sequence 
>C. ELEGANS:181662_AT
tacacaccaattggtcccagtgcgctgaatacatatgttaatcagatgaattcattcggt
ttttatttgcaaggacctgtgactcagctaatgataactgtaaatcgatttttggtcgtg
tggatttcggcggcaaaagcttcaaaagatagcaaaaatgttacagtagtagttctaaca
atttcatgggtttttgcaatttggtattcaacattgctaggctttccagacgattgccga
atgcaagtgaatttcgggcatgttccctggacccgaccaccatgtgccttggaaatgatt
tatgtacttattattatcattttttcgctaggagttttcacaaatattttgaatatttta
atagcaatcaagttatttattttatcggtaagtctctgtttttttttcaaaactgcagcc
gacgctagccgggcccgccaaacatcggctgcttcaagtaaaagggctgaggtttcagcc
gacactacccagaaattttcagaaatactcgaaacttctctcctctgtatccttccaaaa
ccggcggaaatcccgaatctacctattcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACACCAATTGGTCCCAGTGCGC 571 641 220 Antisense
GCAAGGACCTGTGACTCAGCTAATG 594 321 288 Antisense
TTTGGTCGTGTGGATTTCGGCGGCA 237 667 330 Antisense
ATTGCTAGGCTTTCCAGACGATTGC 621 5 432 Antisense
TGAATTTCGGGCATGTTCCCTGGAC 203 577 467 Antisense
CCGACCACCATGTGCCTTGGAAATG 386 263 492 Antisense
TTTTCAAAACTGCAGCCGACGCTAG 126 677 623 Antisense
CCGCCAAACATCGGCTGCTTCAAGT 562 261 654 Antisense
TTTCAGCCGACACTACCCAGAAATT 568 671 692 Antisense
AGAAATACTCGAAACTTCTCTCCTC 236 73 720 Antisense
GGAAATCCCGAATCTACCTATTCCT 375 525 765 Antisense
Sequence Source Affymetrix Proprietary Database