[Home] | [Total List]

[181661_at]

Description Y59A8B.5 /REP_DB=WormBase Gene ID /WP=CE26215 /TR=Q9GRY5 /GB=CAC14414.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 45      6grp_cgc > 63      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 98.4
(0.1)
A 		52.7
(-3)
A 		140.3
(3)
A 		88.3
(-0.6)
A 		88
B 92.2
(1.2)
A 		126.5
(3)
A 		14.5
(-3)
A 		34
(-2)
A 		112
C 113.6
(3)
A 		96.3
(0.7)
A 		69.2
(-3)
A 		96.1
(0.6)
A 		44
avr 101.4
(3) 		91.8
(1) 		74.7
(-2.6) 		72.8
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 63.5
(-1.7)
A 		153.9
(3)
A 		69.8
(-1.4)
A 		88.8
(-0.4)
A 		39.5
(-3)
A 		95.9
(-0)
A 		114
B 67.9
(3)
A 		60.3
(2.1)
A 		62.6
(2.4)
A 		48.1
(0.6)
A 		18.2
(-3)
A 		31.7
(-1.4)
A 		50
C 30.1
(-3)
A 		84.5
(1.2)
A 		67.5
(-0.1)
A 		107.1
(3)
A 		88.2
(1.5)
A 		55.2
(-1)
A 		77
avr 53.8
(-2.4) 		99.6
(3) 		66.6
(-0.9) 		81.3
(0.8) 		48.6
(-3) 		60.9
(-1.6) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 35.8
(2.8)
A 		11.4
(-3)
A 		36.7
(3)
A 		12.9
(-2.6)
A 		25
B 29.4
(2.6)
A 		31.2
(3)
A 		3.4
(-3)
A 		7.2
(-2.2)
A 		28
C 37.6
(3)
A 		27.7
(0.2)
A 		24.1
(-0.8)
A 		16.2
(-3)
A 		21
avr 34.3
(3) 		23.4
(0.1) 		21.4
(-0.5) 		12.1
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 11.7
(-3)
A 		54.7
(3)
A 		15.2
(-2.5)
A 		22.5
(-1.5)
A 		11.9
(-3)
A 		23.3
(-1.4)
A 		43
B 23.6
(3)
A 		20.1
(1.7)
A 		15.2
(-0.1)
A 		12.7
(-1)
A 		7.4
(-3)
A 		11.8
(-1.4)
A 		16
C 11.1
(-3)
A 		25.8
(2)
A 		17.2
(-0.9)
A 		21.5
(0.6)
A 		28.6
(3)
A 		18.5
(-0.5)
A 		18
avr 15.5
(-3) 		33.5
(3) 		15.9
(-2.9) 		18.9
(-1.9) 		16
(-2.8) 		17.9
(-2.2) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181661_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14667
Sequence Type Exemplar sequence
Representative Public ID Y59A8B.5 NCBI
Target Description Y59A8B.5 /REP_DB=WormBase Gene ID /WP=CE26215 /TR=Q9GRY5 /GB=CAC14414.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000028733 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18014987:18022456:-1 11/11 None
Y59A8B.5 ENSEMBL cdna:pseudogene chromosome:CEL140:V:18020478:18022588:-1 gene:Y59A8B.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18020477-18022588(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y59A8B.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14413 Hypothetical protein Y59A8B.3 [Caenorhabditis elegans] ref|NP_507522.1| Serpentine Receptor, class H family member (srh-133) [Caenorhabditis elegans] 0.0
blast CAC14412 Hypothetical protein Y59A8B.4 [Caenorhabditis elegans] ref|NP_507523.1| Serpentine Receptor, class H family member (srh-134) [Caenorhabditis elegans] 1.0E-144
blast CAB04866 Hypothetical protein T27C5.5 [Caenorhabditis elegans] ref|NP_507404.1| Serpentine Receptor, class H family member (srh-132) [Caenorhabditis elegans] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.1E-27
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-61
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.0E-32
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.5E-18
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000028733 15 20-39,46-68,88-110,131-153,168-190,236-258,273-295,315-337,413-435,448-470,490-512,533-555,590-612,636-658,673-692
Sequence
Target Sequence 
>C. ELEGANS:181661_AT
tataatcgaccaccccgatttctacctctttattgataaaccatatgtacttgcaatata
ctatggaataactgcaactgttctctcagcagaaggtatctattactttacacgcactgc
cttatacctctccagcaacaaagccaaatctcaaaggactcataaacttcaagtacaatt
ctttattgcattaacatttcaaattatgattccattatgtgttttgattctgccaattgc
ctacctcatcagtgcatttataacgaaacattttgatcagatcgccatcaatatcgcttt
aaatttcattgcactccacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATAATCGACCACCCCGATTTCTAC 143 655 525 Antisense
CCCGATTTCTACCTCTTTATTGATA 695 259 538 Antisense
GAATAACTGCAACTGTTCTCTCAGC 302 327 590 Antisense
ATCTATTACTTTACACGCACTGCCT 428 31 622 Antisense
ACTTTACACGCACTGCCTTATACCT 343 103 629 Antisense
TATACCTCTCCAGCAACAAAGCCAA 17 661 647 Antisense
GATTCCATTATGTGTTTTGATTCTG 476 433 732 Antisense
TGTTTTGATTCTGCCAATTGCCTAC 583 561 744 Antisense
AATTGCCTACCTCATCAGTGCATTT 680 177 759 Antisense
GATCAGATCGCCATCAATATCGCTT 549 421 799 Antisense
GCTTTAAATTTCATTGCACTCCACG 244 305 820 Antisense
Sequence Source Affymetrix Proprietary Database