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[181660_at] 7TM chemoreceptor, srx family

Description K07C6.6 /REP_DB=WormBase Gene ID /WP=CE17177 /TR=O44647 /GB=AAB94243.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 19      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 50.9
(0.8)
A 		42.3
(-0)
A 		10.1
(-3)
A 		75.2
(3)
A 		65
B 35
(2.6)
A 		37.3
(3)
A 		3.2
(-3)
A 		22.3
(0.4)
A 		34
C 15.1
(-2.6)
A 		57.5
(-1)
A 		4.5
(-3)
A 		164.1
(3)
P 		160
avr 33.7
(-0.9) 		45.7
(-0.1) 		5.9
(-3) 		87.2
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 35.8
(3)
A 		18.7
(-0.2)
A 		31
(2.1)
A 		4.6
(-2.8)
A 		6.5
(-2.4)
A 		3.3
(-3)
A 		33
B 11
(-1.5)
A 		33.6
(3)
P 		3.6
(-3)
A 		15.4
(-0.6)
A 		21.7
(0.6)
A 		5.4
(-2.6)
A 		30
C 4
(-2.9)
A 		54.1
(3)
A 		16.9
(-1.4)
A 		10.3
(-2.2)
A 		3.3
(-3)
A 		5.3
(-2.8)
A 		51
avr 16.9
(-0.6) 		35.5
(3) 		17.2
(-0.6) 		10.1
(-1.9) 		10.5
(-1.9) 		4.7
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 18.5
(3)
A 		9.2
(-0.5)
A 		2.6
(-3)
A 		11
(0.2)
A 		16
B 11.2
(3)
A 		9.2
(1.9)
A 		0.7
(-3)
A 		4.8
(-0.7)
A 		11
C 5
(-2.2)
A 		16.5
(0.4)
A 		1.6
(-3)
A 		27.7
(3)
P 		26
avr 11.6
(1.7) 		11.6
(1.7) 		1.6
(-3) 		14.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6.6
(2.8)
A 		6.6
(2.8)
A 		6.8
(3)
A 		1.2
(-2.6)
A 		2
(-1.8)
A 		0.8
(-3)
A 		6
B 3.8
(-1.3)
A 		11.2
(3)
P 		0.9
(-3)
A 		4.1
(-1.1)
A 		8.8
(1.6)
A 		2
(-2.4)
A 		10
C 1.5
(-2.8)
A 		16.5
(3)
A 		4.3
(-1.8)
A 		2.1
(-2.6)
A 		1.1
(-3)
A 		1.8
(-2.7)
A 		15
avr 4
(-1.5) 		11.4
(3) 		4
(-1.5) 		2.5
(-2.4) 		4
(-1.5) 		1.5
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181660_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15879
Sequence Type Exemplar sequence
Representative Public ID K07C6.6 NCBI
Target Description K07C6.6 /REP_DB=WormBase Gene ID /WP=CE17177 /TR=O44647 /GB=AAB94243.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071689
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000025770 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3931439:3933207:1 None
K07C6.6 ENSEMBL cdna:known chromosome:CEL140:V:3931439:3933207:1 gene:K07C6.6 None
NM_071689 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-63) (srx-63) mRNA, complete cds. None
SNAP00000025765 ENSEMBL cdna:SNAP chromosome:CEL140:V:3931439:3932884:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3931438-3933662(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-63
Ensembl K07C6.6
Entrez Gene 187094 Entrez gene
SwissProt O44647 EMBL-EBI
WormBase CE36549 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94243 Serpentine receptor, class x protein 63 [Caenorhabditis elegans] ref|NP_504090.2| Serpentine Receptor, class X family member (srx-63) [Caenorhabditis elegans] 1.0E-174
blast AAB94251 Serpentine receptor, class x protein 66 [Caenorhabditis elegans] ref|NP_504085.2| Serpentine Receptor, class X family member (srx-66) [Caenorhabditis elegans] 1.0E-105
blast AAB94250 Serpentine receptor, class x protein 65 [Caenorhabditis elegans] ref|NP_504086.2| Serpentine Receptor, class X family member (srx-65) [Caenorhabditis elegans] 3.0E-95
blast AAB94243 Serpentine receptor, class x protein 63 [Caenorhabditis elegans] ref|NP_504090.2| Serpentine Receptor, class X family member (srx-63) [Caenorhabditis elegans] 3.0E-83
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504090.2 6 7-29,39-61,81-103,123-145,165-187,247-269
K07C6.6 6 7-29,39-61,81-103,123-145,165-187,247-269
SNAP00000025765 3 7-29,51-70,180-197
GENEFINDER00000025770 6 7-29,39-61,81-103,123-145,165-187,247-269
Sequence
Target Sequence 
>C. ELEGANS:181660_AT
gtactcacttacttatgcaggtctattttatctcaggatttgtcatttccgtttcgacga
gcaagtgcaatttctaacgttctcgaattcgagaatctgcatgattgtcggctggaatgg
cgattttatcaaaaactcggtcattgtcgcaattatcatgttactagatactgtcacaat
aatgaaatcacgacagttgctgtacaaattgaaaaactctgtggatgctttagctgccca
gcaacttttgtgtcgagatcgtcggtttttgaaacaggctgtgattcaagacacggtttt
catgctggagcttttaacctatttctttattccaaagtattttgaaaatcgatggatcgt
attttttggaacttcgtttgcttgggttgctgttcatgtggcagatggatcgcgttttca
ggagtttagttccgccgctaaaatttttggggtcgcctggtctgaaaataaactttcaaa
tcacatatttactgaatttgttatcaggctcaaaaatatagcctcatttccgtacaacga
cagtctgtctggcttttctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTCACTTACTTATGCAGGTCTA 424 459 399 Antisense
GGATTTGTCATTTCCGTTTCGACGA 197 509 434 Antisense
GCAAGTGCAATTTCTAACGTTCTCG 337 321 459 Antisense
TCTGTGGATGCTTTAGCTGCCCAGC 290 607 616 Antisense
CTGCCCAGCAACTTTTGTGTCGAGA 463 237 632 Antisense
AAGACACGGTTTTCATGCTGGAGCT 439 153 686 Antisense
GCTGGAGCTTTTAACCTATTTCTTT 333 295 702 Antisense
GAACTTCGTTTGCTTGGGTTGCTGT 28 351 767 Antisense
TTTCAGGAGTTTAGTTCCGCCGCTA 544 671 814 Antisense
ATAGCCTCATTTCCGTACAACGACA 184 23 916 Antisense
ACGACAGTCTGTCTGGCTTTTCTAA 21 93 935 Antisense
Sequence Source Affymetrix Proprietary Database