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[181658_at]

Description C17A2.7 /REP_DB=WormBase Gene ID /WP=CE08245 /TR=O16534 /GB=AAB66023.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 2.9
(-3)
A 		39.6
(2.1)
A 		46.3
(3)
A 		8.5
(-2.2)
A 		43
B 4.3
(-3)
A 		5.1
(-2)
A 		9.3
(3)
A 		6.3
(-0.6)
A 		5
C 2.6
(-3)
A 		21.9
(0.6)
A 		17.5
(-0.2)
A 		35
(3)
A 		32
avr 3.3
(-3) 		22.2
(2.4) 		24.4
(3) 		16.6
(0.8) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 26.2
(1.3)
A 		3.4
(-2.7)
A 		35.6
(3)
A 		1.8
(-3)
A 		2.5
(-2.9)
A 		1.7
(-3)
A 		34
B 3.9
(-2.5)
A 		17.3
(-0.2)
A 		35.9
(3)
A 		6.6
(-2)
A 		1.6
(-2.9)
A 		0.9
(-3)
A 		35
C 10.5
(-2.3)
A 		6.5
(-2.7)
A 		3.8
(-3)
A 		65.5
(3)
A 		4
(-3)
A 		6.2
(-2.8)
A 		62
avr 13.5
(-0.1) 		9.1
(-1.3) 		25.1
(3) 		24.6
(2.9) 		2.7
(-3) 		2.9
(-2.9) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.1
(-3)
A 		8.6
(1.1)
A 		12.1
(3)
A 		1.2
(-2.9)
A 		11
B 1.4
(-2.3)
A 		1.3
(-3)
A 		2.2
(3)
A 		1.3
(-3)
A 		1
C 0.8
(-3)
A 		6.3
(3)
A 		6.1
(2.8)
A 		5.9
(2.6)
A 		6
avr 1.1
(-3) 		5.4
(1.5) 		6.8
(3) 		2.8
(-1.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.8
(0.6)
A 		1.2
(-2.3)
A 		7.7
(3)
A 		0.5
(-2.9)
A 		0.8
(-2.7)
A 		0.4
(-3)
A 		7
B 1.4
(-2.2)
A 		5.8
(0.9)
A 		8.7
(3)
A 		1.7
(-2)
A 		0.6
(-2.8)
A 		0.3
(-3)
A 		8
C 3.9
(-1.6)
A 		2
(-2.5)
A 		1
(-3)
A 		13.2
(3)
A 		1.3
(-2.9)
A 		2.1
(-2.5)
A 		12
avr 3.4
(0.1) 		3
(-0.4) 		5.8
(3) 		5.1
(2.1) 		0.9
(-3) 		0.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181658_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4738
Sequence Type Exemplar sequence
Representative Public ID C17A2.7 NCBI
Target Description C17A2.7 /REP_DB=WormBase Gene ID /WP=CE08245 /TR=O16534 /GB=AAB66023.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062267(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062267 NCBI Caenorhabditis elegans C17A2.7 (C17A2.7) mRNA, complete cds. 11/11 None
SNAP00000028368 ENSEMBL cdna:SNAP chromosome:CEL140:II:3841907:3843284:-1 11/11 None
GENEFINDER00000028372 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3841565:3843398:-1 10/11 None
C17A2.7 ENSEMBL cdna:known chromosome:CEL140:II:3841907:3843398:-1 gene:C17A2.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3841905-3843397(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17A2.7
Entrez Gene 182703 Entrez gene
SwissProt O16534 EMBL-EBI
WormBase CE08245 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66023 Hypothetical protein C17A2.7 [Caenorhabditis elegans] ref|NP_494668.1| C17A2.7 [Caenorhabditis elegans] 1.0E-173
blast AAB66023 Hypothetical protein C17A2.7 [Caenorhabditis elegans] ref|NP_494668.1| C17A2.7 [Caenorhabditis elegans] 1.0E-156
blast AAB66023 Hypothetical protein C17A2.7 [Caenorhabditis elegans] ref|NP_494668.1| C17A2.7 [Caenorhabditis elegans] 1.0E-150
blast CAB00871 Hypothetical protein R09H10.2 [Caenorhabditis elegans] ref|NP_501961.1| R09H10.2 [Caenorhabditis elegans] 1.0E-107
blast CAE60751 Hypothetical protein CBG04437 [Caenorhabditis briggsae] 1.0E-106
blast CAE60751 Hypothetical protein CBG04437 [Caenorhabditis briggsae] 1.0E-104
blast CAB00871 Hypothetical protein R09H10.2 [Caenorhabditis elegans] ref|NP_501961.1| R09H10.2 [Caenorhabditis elegans] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 4.1E-52
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 4.1E-52
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494668.1 1 7-24
C17A2.7 1 7-24
GENEFINDER00000028372 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:181658_AT
gattttctgaattctgacgaggcgaaaagacatatacttccaaaaatgaaccaacctagt
accatagtcactctgggcatcggacatgataccggagcagaggagaagcttcttcagcaa
ctaccagaaggatccgagttctttggggccgatcccatgcacgaaatcaacgaaaattta
tacacaagtatcccaggaaaatactttccatttgcagtcggagcagctcctggacttgcg
gaagctaatgtgctaattgatacttcatacactacaaaaacagttgtcaatgtggatatt
atatattttctgacaaaattgatcaatagaactgtaatcgatgatctgtggatggacgca
gaaggcgctgaatatggaatgtttgagtttttctataatggtggagaatttgataaaaat
aacattaaattttgccaaatcaatattgagattcatgttcccgacacccaccagaaaaaa
ctgattcacgactttatttttcagctgatgaaagatcgaagatatgctatttttagacca
gtaaaaggaaagcacatgcgtctttatctgctcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTCTGAATTCTGACGAGGCGA 608 429 274 Antisense
GAACCAACCTAGTACCATAGTCACT 516 343 321 Antisense
ACCATAGTCACTCTGGGCATCGGAC 128 87 334 Antisense
GGGCATCGGACATGATACCGGAGCA 267 487 348 Antisense
GAGAAGCTTCTTCAGCAACTACCAG 90 393 376 Antisense
CAGAAGGATCCGAGTTCTTTGGGGC 398 187 398 Antisense
CCGATCCCATGCACGAAATCAACGA 423 263 422 Antisense
AATACTTTCCATTTGCAGTCGGAGC 669 171 473 Antisense
AGTCGGAGCAGCTCCTGGACTTGCG 495 35 489 Antisense
TATTGAGATTCATGTTCCCGACACC 684 665 717 Antisense
CACATGCGTCTTTATCTGCTCAATT 345 195 826 Antisense
Sequence Source Affymetrix Proprietary Database