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[181657_at]

Description K02F6.4 /REP_DB=WormBase Gene ID /WP=CE11662 /TR=O16632 /GB=AAB66104.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 43      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 74.5
(1.5)
A 		85.1
(3)
A 		76.7
(1.8)
A 		43.2
(-3)
A 		42
B 40.2
(-3)
A 		94.2
(3)
A 		54
(-1.5)
A 		44.6
(-2.5)
A 		54
C 64.6
(-0.8)
A 		72.3
(-0.1)
A 		38.4
(-3)
A 		108.9
(3)
A 		71
avr 59.8
(-2.3) 		83.9
(3) 		56.4
(-3) 		65.6
(-1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 101.6
(3)
A 		5.3
(-3)
A 		41.2
(-0.8)
A 		57.2
(0.2)
A 		33.3
(-1.3)
A 		51.9
(-0.1)
A 		96
B 38.8
(-0.6)
A 		56.5
(0.9)
A 		32.1
(-1.1)
A 		83.1
(3)
A 		8.4
(-3)
A 		12
(-2.7)
A 		75
C 61.1
(-0.3)
A 		87.5
(3)
P 		64.7
(0.2)
A 		54.4
(-1.1)
A 		45.7
(-2.2)
A 		39.2
(-3)
A 		48
avr 67.2
(3) 		49.8
(0.3) 		46
(-0.3) 		64.9
(2.6) 		29.1
(-3) 		34.4
(-2.2) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 27.1
(3)
A 		18.5
(0.5)
A 		20
(1)
A 		6.3
(-3)
A 		21
B 12.8
(-1.6)
A 		23.3
(3)
A 		12.5
(-1.7)
A 		9.5
(-3)
A 		14
C 21.4
(3)
A 		20.8
(2.6)
A 		13.4
(-3)
A 		18.4
(0.8)
A 		8
avr 20.4
(2.7) 		20.9
(3) 		15.3
(-0.5) 		11.4
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 18.7
(3)
A 		1.9
(-3)
A 		9
(-0.5)
A 		14.5
(1.5)
A 		10.1
(-0.1)
A 		12.6
(0.8)
A 		17
B 13.5
(0.3)
A 		18.8
(2)
A 		7.8
(-1.6)
A 		22
(3)
A 		3.4
(-3)
A 		4.5
(-2.6)
A 		19
C 22.6
(1.4)
A 		26.7
(3)
P 		16.5
(-0.9)
A 		10.9
(-3)
A 		14.8
(-1.5)
A 		13.1
(-2.2)
A 		16
avr 18.3
(3) 		15.8
(1.3) 		11.1
(-1.9) 		15.8
(1.3) 		9.4
(-3) 		10.1
(-2.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181657_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4889
Sequence Type Exemplar sequence
Representative Public ID K02F6.4 NCBI
Target Description K02F6.4 /REP_DB=WormBase Gene ID /WP=CE11662 /TR=O16632 /GB=AAB66104.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061892(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061892 NCBI Caenorhabditis elegans K02F6.4 (K02F6.4) mRNA, complete cds. 11/11 A 
SNAP00000019491 ENSEMBL cdna:SNAP chromosome:CEL140:II:2537792:2543921:1 11/11 None
GENEFINDER00000019501 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2535418:2544437:1 11/11 None
K02F6.4 ENSEMBL cdna:known chromosome:CEL140:II:2538495:2543921:1 gene:K02F6.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2538493-2543920(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02F6.4
Entrez Gene 186907 Entrez gene
SwissProt O16632 EMBL-EBI
WormBase CE11662 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66104 Hypothetical protein K02F6.4 [Caenorhabditis elegans] ref|NP_494293.1| K02F6.4 [Caenorhabditis elegans] 0.0
blast AAB66103 Hypothetical protein K02F6.3 [Caenorhabditis elegans] ref|NP_494294.2| K02F6.3 [Caenorhabditis elegans] 0.0
blast AAB66105 Hypothetical protein K02F6.5 [Caenorhabditis elegans] ref|NP_494292.2| K02F6.5 [Caenorhabditis elegans] 1.0E-130
blast CAE67825 Hypothetical protein CBG13407 [Caenorhabditis briggsae] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.9E-24
Pfam IPR002110 EMBL-EBI Ankyrin 9.5E-7
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.9E-24
Pfam IPR002110 EMBL-EBI Ankyrin 9.5E-7
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.9E-24
Pfam IPR002110 EMBL-EBI Ankyrin 9.5E-7
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 8.2E-40
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494293.1 1 781-803
K02F6.4 1 781-803
SNAP00000019491 1 788-810
GENEFINDER00000019501 1 974-996
Sequence
Target Sequence 
>C. ELEGANS:181657_AT
atgctagggaagccactcacatcatcttgccaacggatgaaaaaggtgttttgtcgtttg
atgttcgaggtgataaggaaatgtttccgtatatcttcagagaaactgttctcatgaaga
atagttggatgaccgcctgtctcaaggataagaagaatttcgcggacgactacaagttcc
aggtggaaggtgttgagatgaaatcggagacttttaatacggttcgcctgattcaccaac
acgctcaacagtaccaaatcccttatctggctggagtcaccatgtattaccatcagttcc
cggaaacacctgatacaacgtttgaaaatctcgtacgtgatcttggagccgatgttcgtc
aggatttgagatatttggacagacaaaatacggttactgcttccccatactatcgcgacg
acattggtccagtgttcattatcactaagtcgaaggacgagcttgtgaaagagtatgcat
ttgtgaagaataacaactgctacaccatctttacctattacgagttcctccaattcctgc
ttgcatttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTAGGGAAGCCACTCACATCAT 282 41 2966 Antisense
GAATAGTTGGATGACCGCCTGTCTC 584 325 3084 Antisense
TTCGCGGACGACTACAAGTTCCAGG 197 697 3124 Antisense
TAATACGGTTCGCCTGATTCACCAA 15 633 3180 Antisense
GTACCAAATCCCTTATCTGGCTGGA 327 457 3216 Antisense
ACCATGTATTACCATCAGTTCCCGG 94 87 3244 Antisense
TTCCCCATACTATCGCGACGACATT 306 697 3366 Antisense
GCGACGACATTGGTCCAGTGTTCAT 235 289 3380 Antisense
TAACAACTGCTACACCATCTTTACC 441 639 3456 Antisense
TCTTTACCTATTACGAGTTCCTCCA 274 607 3473 Antisense
TCCTCCAATTCCTGCTTGCATTTAA 231 593 3491 Antisense
Sequence Source Affymetrix Proprietary Database