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[181656_at]

Description C18H7.9 /REP_DB=WormBase Gene ID /WP=CE17434 /TR=Q9GZF8 /GB=AAF98614.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 37      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 9.8
(2.9)
A 		9.9
(3)
A 		5.6
(-1.4)
A 		4
(-3)
A 		6
B 27.7
(3)
A 		13.9
(-0.2)
A 		8.5
(-1.5)
A 		1.9
(-3)
A 		26
C 49.4
(1.9)
A 		56.6
(2.7)
A 		7.1
(-3)
A 		58.8
(3)
A 		52
avr 29
(3) 		26.8
(2.4) 		7.1
(-3) 		21.6
(1) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 3
(-3)
A 		33.5
(1)
A 		8.6
(-2.3)
A 		48.3
(3)
A 		23.8
(-0.2)
A 		7.2
(-2.4)
A 		45
B 4.7
(-3)
A 		20.1
(-0.7)
A 		41
(2.4)
A 		44.8
(3)
A 		13.5
(-1.7)
A 		16.7
(-1.2)
A 		40
C 9.4
(-3)
A 		44.9
(1)
A 		63.1
(3)
A 		48
(1.3)
A 		25.3
(-1.2)
A 		15.4
(-2.3)
A 		54
avr 5.7
(-3) 		32.8
(0.9) 		37.6
(1.6) 		47
(3) 		20.9
(-0.8) 		13.1
(-1.9) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.6
(3)
A 		2.1
(0)
A 		1.5
(-1.2)
A 		0.6
(-3)
A 		3
B 8.8
(3)
A 		3.4
(-0.9)
A 		2
(-1.9)
A 		0.4
(-3)
A 		8
C 16.4
(3)
A 		16.3
(3)
A 		2.5
(-3)
A 		9.9
(0.2)
A 		14
avr 9.6
(3) 		7.3
(1.2) 		2
(-3) 		3.6
(-1.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.5
(-3)
A 		11.9
(2.8)
A 		1.9
(-2.3)
A 		12.3
(3)
A 		7.2
(0.4)
A 		1.8
(-2.3)
A 		12
B 1.6
(-3)
A 		6.7
(-0)
A 		9.9
(1.8)
A 		11.9
(3)
A 		5.5
(-0.7)
A 		6.2
(-0.3)
A 		10
C 3.5
(-3)
A 		13.7
(1.9)
A 		16.1
(3)
A 		9.6
(-0.1)
A 		8.2
(-0.8)
A 		5.1
(-2.2)
A 		13
avr 1.9
(-3) 		10.8
(2.7) 		9.3
(1.7) 		11.3
(3) 		7
(0.3) 		4.4
(-1.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181656_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10380
Sequence Type Exemplar sequence
Representative Public ID C18H7.9 NCBI
Target Description C18H7.9 /REP_DB=WormBase Gene ID /WP=CE17434 /TR=Q9GZF8 /GB=AAF98614.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067555(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067555 NCBI Caenorhabditis elegans C18H7.9 (C18H7.9) mRNA, complete cds. 11/11 None
SNAP00000042866 ENSEMBL cdna:SNAP chromosome:CEL140:IV:602404:603643:-1 11/11 None
C18H7.9 ENSEMBL cdna:known chromosome:CEL140:IV:602991:603643:-1 gene:C18H7.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042871 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:602996-603649(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18H7.9
Entrez Gene 182806 Entrez gene
SwissProt Q9GZF8 EMBL-EBI
WormBase CE17434 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98614 Hypothetical protein C18H7.9 [Caenorhabditis elegans] ref|NP_499956.1| C18H7.9 [Caenorhabditis elegans] 7.0E-82
blast AAF98614 Hypothetical protein C18H7.9 [Caenorhabditis elegans] ref|NP_499956.1| C18H7.9 [Caenorhabditis elegans] 4.0E-77
blast CAE73753 Hypothetical protein CBG21287 [Caenorhabditis briggsae] 5.0E-51
blast CAE73753 Hypothetical protein CBG21287 [Caenorhabditis briggsae] 1.0E-50
blast CAE65563 Hypothetical protein CBG10553 [Caenorhabditis briggsae] 6.0E-49
blast CAE65563 Hypothetical protein CBG10553 [Caenorhabditis briggsae] 6.0E-33
Sequence
Target Sequence 
>C. ELEGANS:181656_AT
atccatattctacagcccaacaaaaatggctctaccaggatcatctggttcttccgaccc
tggaaaaattgttaaaatacaatttaaaggataagaaggtgttggatattggatgtggaa
atggtctcaacagcacgacctttcttcaatggggagctcgaaaagttgttggattcgaca
actctcaagaaatgattgaaaattgcaagaacctccacaaatcatcggaacaatcaagtt
tccatcatctcaacgtcaccgatttccagctcgatgagaagttccacgtggcaactgcag
tttttgtactccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCATATTCTACAGCCCAACAAAA 381 37 35 Antisense
AAAATGGCTCTACCAGGATCATCTG 154 133 57 Antisense
ACCAGGATCATCTGGTTCTTCCGAC 436 85 68 Antisense
AATGGTCTCAACAGCACGACCTTTC 311 163 154 Antisense
GCACGACCTTTCTTCAATGGGGAGC 472 299 167 Antisense
TTGGATTCGACAACTCTCAAGAAAT 97 707 203 Antisense
TGCAAGAACCTCCACAAATCATCGG 75 577 238 Antisense
AACAATCAAGTTTCCATCATCTCAA 269 135 263 Antisense
TCACCGATTTCCAGCTCGATGAGAA 194 627 290 Antisense
CAGCTCGATGAGAAGTTCCACGTGG 30 205 301 Antisense
GGCAACTGCAGTTTTTGTACTCCAA 247 535 324 Antisense
Sequence Source Affymetrix Proprietary Database