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[181654_at]

Description K12H6.4 /REP_DB=WormBase Gene ID /WP=CE20007 /TR=Q9N5H3 /GB=AAF39934.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 1.4
(-3)
A 		16.8
(3)
A 		2.4
(-2.6)
A 		13.1
(1.6)
A 		15
B 1.7
(-3)
A 		6
(-2.3)
A 		4.3
(-2.6)
A 		37.8
(3)
A 		36
C 11.3
(-2)
A 		24.5
(0.2)
A 		5
(-3)
A 		41.5
(3)
A 		37
avr 4.8
(-2.8) 		15.8
(-0.3) 		3.9
(-3) 		30.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 15.7
(1.2)
A 		22.1
(3)
A 		0.6
(-3)
A 		4.8
(-1.8)
A 		4.5
(-1.9)
A 		19.1
(2.2)
A 		22
B 0.7
(-3)
A 		14.3
(-0.2)
A 		1.9
(-2.8)
A 		18
(0.6)
A 		29.9
(3)
A 		12
(-0.7)
A 		29
C 1
(-3)
A 		1.9
(-2.7)
A 		18.2
(3)
A 		3.6
(-2.1)
A 		2.8
(-2.4)
A 		9.2
(-0.1)
A 		17
avr 5.8
(-3) 		12.8
(2.5) 		6.9
(-2.1) 		8.8
(-0.6) 		12.4
(2.2) 		13.4
(3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.5
(-3)
A 		3.6
(3)
A 		0.6
(-2.8)
A 		1.9
(-0.3)
A 		3
B 0.6
(-3)
A 		1.5
(-2.3)
A 		1
(-2.7)
A 		8.1
(3)
A 		8
C 3.7
(-0.7)
A 		7
(3)
A 		1.7
(-3)
A 		7
(3)
A 		5
avr 1.6
(-2.3) 		4
(0.8) 		1.1
(-3) 		5.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.9
(-0.8)
A 		7.8
(3)
A 		0.1
(-3)
A 		1.2
(-2.1)
A 		1.4
(-2)
A 		4.7
(0.6)
A 		8
B 0.3
(-3)
A 		4.7
(-0.8)
A 		0.5
(-2.9)
A 		4.8
(-0.7)
A 		12.1
(3)
A 		4.5
(-0.9)
A 		12
C 0.4
(-3)
A 		0.6
(-2.7)
A 		4.6
(3)
A 		0.7
(-2.6)
A 		0.9
(-2.3)
A 		3.1
(0.9)
A 		4
avr 1.2
(-3) 		4.4
(2.3) 		1.7
(-2.2) 		2.2
(-1.3) 		4.8
(3) 		4.1
(1.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181654_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4730
Sequence Type Exemplar sequence
Representative Public ID K12H6.4 NCBI
Target Description K12H6.4 /REP_DB=WormBase Gene ID /WP=CE20007 /TR=Q9N5H3 /GB=AAF39934.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061973(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061973 NCBI Caenorhabditis elegans K12H6.4 (K12H6.4) mRNA, complete cds. 11/11 None
SNAP00000024510 ENSEMBL cdna:SNAP chromosome:CEL140:II:2823756:2824257:-1 11/11 None
GENEFINDER00000024530 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2823756:2824257:-1 11/11 None
K12H6.4 ENSEMBL cdna:known chromosome:CEL140:II:2823756:2824179:-1 gene:K12H6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2823754-2824178(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12H6.4
Entrez Gene 187343 Entrez gene
SwissProt Q9N5H3 EMBL-EBI
WormBase CE20007 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494374 K12H6.4 [Caenorhabditis elegans] gb|AAF39934.1| Hypothetical protein K12H6.4 [Caenorhabditis elegans] 3.0E-57
Sequence
Target Sequence 
>C. ELEGANS:181654_AT
ggcgataggttgccttgaacagcgtaaagatgaatgtctttacaaattgttccgaaaggg
agccgatgtcgacaatctgaaaagatacccaatcatggaatcggaaattaaaaagttttc
gatcaaaggcaacacagctgaagccttggtttacctggaaagtcaatatgagagaggtta
ttacgtatacctcttgctcgatgagaataaacagttgccgggtcttttccgaatttacag
tgtccacaaatgtgtcactgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGATAGGTTGCCTTGAACAGCGT 293 541 45 Antisense
GAATGTCTTTACAAATTGTTCCGAA 217 327 76 Antisense
GTTCCGAAAGGGAGCCGATGTCGAC 347 439 93 Antisense
GGAGCCGATGTCGACAATCTGAAAA 24 523 103 Antisense
AAAGATACCCAATCATGGAATCGGA 303 121 125 Antisense
GTTTTCGATCAAAGGCAACACAGCT 41 449 159 Antisense
ACAGCTGAAGCCTTGGTTTACCTGG 303 109 178 Antisense
TTATTACGTATACCTCTTGCTCGAT 32 679 222 Antisense
GAGAATAAACAGTTGCCGGGTCTTT 134 389 247 Antisense
GTCTTTTCCGAATTTACAGTGTCCA 483 467 266 Antisense
CAGTGTCCACAAATGTGTCACTGAC 97 209 282 Antisense
Sequence Source Affymetrix Proprietary Database