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[181652_at]

Description VT23B5.1 /REP_DB=WormBase Gene ID /WP=CE20121 /TR=Q9XWB0 /GB=CAA21779.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 31      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 109.6
(3)
P 		32.7
(-1.7)
A 		11
(-3)
A 		87.9
(1.7)
A 		99
B 105.2
(3)
P 		64.1
(-0.5)
A 		33.8
(-3)
A 		46.7
(-1.9)
A 		71
C 124.7
(3)
P 		40.4
(-3)
A 		46
(-2.6)
A 		85.1
(0.2)
A 		84
avr 113.2
(3) 		45.7
(-1.9) 		30.3
(-3) 		73.2
(0.1) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 32
(0.6)
A 		50.3
(3)
A 		27.1
(-0.1)
A 		49.4
(2.9)
A 		5
(-3)
A 		47.3
(2.6)
A 		45
B 50.6
(1.5)
A 		66.3
(3)
A 		46.5
(1.1)
P 		3.9
(-3)
A 		5.4
(-2.9)
A 		43.5
(0.8)
A 		62
C 84.1
(3)
P 		39.9
(-0.6)
A 		66.1
(1.5)
P 		10.2
(-3)
A 		66.4
(1.6)
A 		29.8
(-1.4)
A 		74
avr 55.6
(3) 		52.2
(2.4) 		46.6
(1.4) 		21.2
(-3) 		25.6
(-2.2) 		40.2
(0.3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 39.9
(3)
P 		7.1
(-2.3)
A 		2.9
(-3)
A 		12.9
(-1.4)
A 		37
B 33.6
(3)
P 		15.8
(-1.1)
A 		7.8
(-3)
A 		10
(-2.5)
A 		26
C 41.3
(3)
P 		11.6
(-3)
A 		16
(-2.1)
A 		14.3
(-2.5)
A 		30
avr 38.3
(3) 		11.5
(-2.5) 		8.9
(-3) 		12.4
(-2.3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 5.9
(-1.4)
A 		17.9
(3)
A 		5.9
(-1.4)
A 		12.5
(1)
A 		1.5
(-3)
A 		11.5
(0.7)
A 		16
B 17.6
(1.7)
A 		22.1
(3)
A 		11.3
(-0.1)
P 		1
(-3)
A 		2.2
(-2.7)
A 		16.2
(1.3)
A 		21
C 31.2
(3)
P 		12.2
(-0.9)
A 		16.8
(0)
P 		2
(-3)
A 		21.5
(1)
A 		10
(-1.4)
A 		29
avr 18.2
(3) 		17.4
(2.6) 		11.3
(-0.2) 		5.2
(-3) 		8.4
(-1.5) 		12.6
(0.4) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181652_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9002
Sequence Type Exemplar sequence
Representative Public ID VT23B5.1 NCBI
Target Description VT23B5.1 /REP_DB=WormBase Gene ID /WP=CE20121 /TR=Q9XWB0 /GB=CAA21779.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070020(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070020 NCBI Caenorhabditis elegans VT23B5.1 (VT23B5.1) mRNA, complete cds. 11/11 None
SNAP00000031855 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12662672:12671201:1 10/11 None
GENEFINDER00000031856 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12662672:12671358:1 10/11 None
VT23B5.1 ENSEMBL cdna:known chromosome:CEL140:IV:12662672:12667399:1 gene:VT23B5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12662677-12667405(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl VT23B5.1
Entrez Gene 3565360 Entrez gene
SwissProt Q9XWB0 EMBL-EBI
WormBase CE20121 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21779 Hypothetical protein VT23B5.1 [Caenorhabditis elegans] ref|NP_502421.1| VT23B5.1 [Caenorhabditis elegans] 0.0
blast CAA21780 Hypothetical protein VT23B5.2 [Caenorhabditis elegans] emb|CAB07677.1| Hypothetical protein VT23B5.2 [Caenorhabditis elegans] ref|NP_502422.1| VT23B5.2 [Caenorhabditis elegans] 0.0
blast CAE59991 Hypothetical protein CBG03484 [Caenorhabditis briggsae] 0.0
blast AAN15137 ALFY [Homo sapiens] 1.0E-105
blast NP_055806 WD repeat and FYVE domain containing 3 isoform 1 [Homo sapiens] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR000409 EMBL-EBI Beige/BEACH domain 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181652_AT
ctctaccatcatccggatcggtggcagcatggaagagtacatcaactgacaagcaagtaa
tattcatgtggctccgagttcatgtcagtcttatcaaagagctcgtaagagcccagagca
ctcgatacacggaatggcatgctcatgttcgtaagtggtgtctgcatgattggcatcaat
gggaagctgagctgactcgtgaacgaggaatttggggacccgaacgagcatcgaagctgg
aaaagttcaagttggatctcacagaaggtccgacgactcgaatgcgacggaaattaattc
ccaatcgaaatttctatcatatttatccattccgaccacatttggaagctccatccgcca
aggctcaacgagcaaaagttgcgatttcattcgattcgaagccatactatgaaacttgcc
ttagacatcgtcgccggacacttgacactcgaattattgattcttcaaatgtttcgacag
cttcacctgaagatggatctggatcttccaatttattgggatattcgtttaccgatttgt
cgcgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTACCATCATCCGGATCGGTGGC 237 229 2324 Antisense
ATGTGGCTCCGAGTTCATGTCAGTC 85 51 2389 Antisense
GTAAGAGCCCAGAGCACTCGATACA 569 461 2428 Antisense
GGCATGCTCATGTTCGTAAGTGGTG 241 537 2459 Antisense
GGGAAGCTGAGCTGACTCGTGAACG 222 493 2504 Antisense
TTGGGGACCCGAACGAGCATCGAAG 36 669 2535 Antisense
GATCTCACAGAAGGTCCGACGACTC 305 419 2578 Antisense
ATATTTATCCATTCCGACCACATTT 443 19 2642 Antisense
GAAACTTGCCTTAGACATCGTCGCC 220 355 2734 Antisense
AAATGTTTCGACAGCTTCACCTGAA 33 121 2790 Antisense
ATTCGTTTACCGATTTGTCGCGTGA 489 1 2846 Antisense
Sequence Source Affymetrix Proprietary Database