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[181651_at]

Description F58E1.7 /REP_DB=WormBase Gene ID /WP=CE11384 /TR=Q9TZG8 /GB=AAC67484.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 24.8
(3)
A 		4.1
(-2.8)
A 		3.5
(-3)
A 		16.2
(0.6)
A 		21
B 11.3
(-3)
A 		31
(1.6)
A 		36.8
(3)
A 		11.3
(-3)
A 		26
C 2.5
(-3)
A 		48.4
(1.3)
A 		11
(-2.2)
A 		66.1
(3)
A 		64
avr 12.9
(-3) 		27.8
(1.9) 		17.1
(-1.6) 		31.2
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 45.1
(2.2)
A 		2.4
(-3)
A 		52
(3)
A 		31.4
(0.5)
A 		36
(1.1)
A 		43.8
(2)
A 		50
B 50.7
(2.6)
A 		53.7
(3)
A 		5.8
(-3)
A 		40.9
(1.4)
A 		23.5
(-0.8)
A 		12.8
(-2.1)
A 		48
C 3.8
(-2.8)
A 		6.4
(-2.6)
A 		60.7
(3)
A 		41
(1)
A 		2
(-3)
A 		32.8
(0.1)
A 		59
avr 33.2
(1) 		20.8
(-2.9) 		39.5
(3) 		37.8
(2.5) 		20.5
(-3) 		29.8
(-0.1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		2.4
(-1.9)
A 		8
B 3.6
(-1.8)
A 		7.7
(2.2)
A 		8.5
(3)
A 		2.4
(-3)
A 		6
C 0.8
(-3)
A 		13.9
(3)
A 		3.8
(-1.6)
A 		11.1
(1.7)
A 		13
avr 4.5
(-2.8) 		7.5
(3) 		4.4
(-3) 		5.3
(-1.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.3
(1.3)
A 		0.9
(-3)
A 		11.3
(3)
A 		8
(1.1)
A 		10.9
(2.8)
A 		10.7
(2.7)
A 		10
B 17.7
(2.9)
A 		17.9
(3)
A 		1.4
(-3)
A 		10.8
(0.4)
A 		9.6
(-0)
A 		4.8
(-1.8)
A 		17
C 1.4
(-2.7)
A 		2
(-2.5)
A 		15.5
(3)
A 		8.3
(0.1)
A 		0.7
(-3)
A 		11
(1.2)
A 		15
avr 9.1
(2.3) 		6.9
(-3) 		9.4
(3) 		9
(2) 		7.1
(-2.5) 		8.8
(1.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181651_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4865
Sequence Type Exemplar sequence
Representative Public ID F58E1.7 NCBI
Target Description F58E1.7 /REP_DB=WormBase Gene ID /WP=CE11384 /TR=Q9TZG8 /GB=AAC67484.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061636(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061636 NCBI Caenorhabditis elegans F58E1.7 (F58E1.7) mRNA, complete cds. 11/11 None
GENEFINDER00000040841 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1677499:1678977:-1 11/11 None
F58E1.7 ENSEMBL cdna:known chromosome:CEL140:II:1677452:1679255:-1 gene:F58E1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040824 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1677450-1679254(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E1.7
Entrez Gene 186512 Entrez gene
SwissProt Q9TZG8 EMBL-EBI
WormBase CE11384 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67484 Hypothetical protein F58E1.7 [Caenorhabditis elegans] ref|NP_494037.1| F58E1.7 [Caenorhabditis elegans] 1.0E-153
blast AAC67484 Hypothetical protein F58E1.7 [Caenorhabditis elegans] ref|NP_494037.1| F58E1.7 [Caenorhabditis elegans] 1.0E-117
blast AAB66201 Hypothetical protein F45C12.1 [Caenorhabditis elegans] ref|NP_494064.1| F45C12.1 [Caenorhabditis elegans] 2.0E-53
blast AAM34815 Hypothetical protein T11F1.7 [Caenorhabditis elegans] ref|NP_494406.1| T11F1.7 [Caenorhabditis elegans] 2.0E-33
blast AAM34815 Hypothetical protein T11F1.7 [Caenorhabditis elegans] ref|NP_494406.1| T11F1.7 [Caenorhabditis elegans] 3.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 6.0E-8
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 6.0E-8
Sequence
Target Sequence 
>C. ELEGANS:181651_AT
atcaatgggctccacctaacaaaccaccaatttcccgacaacttgtccacattttcaaat
gtttaccttatcaacggaaacccaacgtgacaaagatcgtaacgccaaatatgccgacaa
gacgcgaagttgcggtgaatatccgggagaattctgaaatgacacatttgggaatgccgc
tgctggagagcatctcgaatagtctccttggacctgtgatcatgaatctggaaaacttgc
acccagacttttgcctcaatatcgacgagctccagctccttctcacccatagagtagaat
ttcgaaacctccacgcaacctactgccctgactttgaaaattccggtagacgagtactat
acaagacgtgtaaattccaacaaatgagctcactggaatcaaattgctcaagtatttatg
gtgatgtggttgtcgatgcaagtgatgggcgccacctgcacaaactgttctcgctggaat
atttgtacggatcactgaaaattcagtatatgaaggcagatgggttggagtttttgagcg
ctttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAATGGGCTCCACCTAACAAACC 110 25 182 Antisense
CACCAATTTCCCGACAACTTGTCCA 581 201 206 Antisense
GAATGCCGCTGCTGGAGAGCATCTC 207 331 353 Antisense
AGCATCTCGAATAGTCTCCTTGGAC 238 79 370 Antisense
GTCTCCTTGGACCTGTGATCATGAA 222 471 383 Antisense
TGCCTCAATATCGACGAGCTCCAGC 152 587 433 Antisense
GCTCCTTCTCACCCATAGAGTAGAA 648 297 456 Antisense
GAGTAGAATTTCGAAACCTCCACGC 258 399 473 Antisense
GTCGATGCAAGTGATGGGCGCCACC 24 475 613 Antisense
TGCACAAACTGTTCTCGCTGGAATA 493 577 638 Antisense
GGGTTGGAGTTTTTGAGCGCTTTGC 328 497 703 Antisense
Sequence Source Affymetrix Proprietary Database