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[181650_at]

Description F59G1.4 /REP_DB=WormBase Gene ID /WP=CE07318 /TR=Q21051 /GB=AAK31529.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 16      6grp_total > 14      4grp_total > 31      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 255.4
(3)
P 		58.6
(-3)
P 		59.2
(-3)
A 		167.8
(0.3)
A 		197
B 270.6
(3)
P 		77.5
(-2.3)
P 		53.4
(-3)
A 		164.9
(0.1)
P 		217
C 306.6
(3)
P 		120.5
(-2.2)
P 		90.6
(-3)
P 		125.9
(-2)
P 		216
avr 277.5
(3) 		85.5
(-2.5) 		67.7
(-3) 		152.9
(-0.6) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 203.2
(2.5)
P 		213
(3)
P 		122.4
(-1.9)
P 		101.2
(-3)
M 		113.8
(-2.3)
A 		105.8
(-2.8)
P 		112
B 190.6
(3)
P 		105.6
(-1.5)
P 		93.9
(-2.1)
P 		126.9
(-0.4)
P 		77
(-3)
A 		105.3
(-1.5)
P 		114
C 194.6
(3)
P 		164.8
(1.6)
P 		153.8
(1)
P 		137.2
(0.2)
P 		69.6
(-3)
A 		76.9
(-2.6)
P 		125
avr 196.1
(3) 		161.1
(1.1) 		123.4
(-1) 		121.8
(-1.1) 		86.8
(-3) 		96
(-2.5) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 93
(3)
P 		12.7
(-3)
P 		15.5
(-2.8)
A 		24.6
(-2.1)
A 		80
B 86.3
(3)
P 		19.1
(-2.5)
P 		12.4
(-3)
A 		35.1
(-1.2)
P 		74
C 101.5
(3)
P 		34.6
(-2)
P 		31.6
(-2.2)
P 		21.2
(-3)
P 		80
avr 93.6
(3) 		22.1
(-2.8) 		19.8
(-3) 		27
(-2.4) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 37.5
(-1.6)
P 		75.7
(3)
P 		26.7
(-2.9)
P 		25.7
(-3)
M 		34.3
(-2)
A 		25.8
(-3)
P 		50
B 66.3
(3)
P 		35.2
(-1.3)
P 		22.8
(-3)
P 		33.6
(-1.5)
P 		31.3
(-1.8)
A 		39.3
(-0.7)
P 		44
C 72.1
(3)
P 		50.3
(0.4)
P 		39.1
(-1)
P 		27.6
(-2.4)
P 		22.5
(-3)
A 		25.7
(-2.6)
P 		50
avr 58.6
(3) 		53.7
(2) 		29.5
(-2.9) 		29
(-3) 		29.4
(-2.9) 		30.3
(-2.7) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181650_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4728
Sequence Type Exemplar sequence
Representative Public ID F59G1.4 NCBI
Target Description F59G1.4 /REP_DB=WormBase Gene ID /WP=CE07318 /TR=Q21051 /GB=AAK31529.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062776(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062776 NCBI Caenorhabditis elegans F59G1.4 (F59G1.4) mRNA, complete cds. 11/11 None
SNAP00000033448 ENSEMBL cdna:SNAP chromosome:CEL140:II:5896137:5898479:1 11/11 None
GENEFINDER00000033456 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5896137:5904434:1 11/11 None
F59G1.4 ENSEMBL cdna:known chromosome:CEL140:II:5896137:5898860:1 gene:F59G1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5896133-5898857(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59G1.4
Entrez Gene 173999 Entrez gene
SwissProt Q21051 EMBL-EBI
WormBase CE07318 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31529 Hypothetical protein F59G1.4 [Caenorhabditis elegans] ref|NP_495177.1| F59G1.4 [Caenorhabditis elegans] 0.0
blast AAK31529 Hypothetical protein F59G1.4 [Caenorhabditis elegans] ref|NP_495177.1| F59G1.4 [Caenorhabditis elegans] 1.0E-173
blast CAE59217 Hypothetical protein CBG02532 [Caenorhabditis briggsae] 1.0E-166
blast CAE59217 Hypothetical protein CBG02532 [Caenorhabditis briggsae] 1.0E-162
blast AAK31529 Hypothetical protein F59G1.4 [Caenorhabditis elegans] ref|NP_495177.1| F59G1.4 [Caenorhabditis elegans] 1.0E-155
blast CAE59217 Hypothetical protein CBG02532 [Caenorhabditis briggsae] 1.0E-143
blast T34313 hypothetical protein F59G1.2 - Caenorhabditis elegans 1.0E-111
blast XP_422737 PREDICTED: similar to hypothetical protein ARM [Gallus gallus] 7.0E-18
Sequence
Target Sequence 
>C. ELEGANS:181650_AT
ggtcgcagttactttacagttcatcacaaaatcttccttccttgcctaattgctgttctc
cgtggcaaacggatcccatccacaacacatgatcagttgattgcatgtgttcagaaaatg
agtatacgagcaacttgtcagaaggagttgattcaaagtggaatgttggaatgggcggtg
aatcatttggaccagaagcttaataattacgcattcgaatatctcgcagcacttattgtc
aatctgtcaacaaattcattgagccatccgttaattacacgacttgctgattcttttgca
aactcgattgccaatttggtagttaagataacacatggaccctcatgctctctgtacaac
actcttctcctttcggtactctcgtgtccacgtatccgtcttcgtgccaaagatacaaag
cttcttgaggctattcgtatccggttggaaactcggagaacgtgtccgctttgcaatctt
cacatacctttcttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCGCAGTTACTTTACAGTTCATC 258 503 445 Antisense
TCATCACAAAATCTTCCTTCCTTGC 250 621 465 Antisense
TTGCCTAATTGCTGTTCTCCGTGGC 260 693 486 Antisense
TCCGTGGCAAACGGATCCCATCCAC 467 593 503 Antisense
ATCTCGCAGCACTTATTGTCAATCT 407 33 665 Antisense
ATTACACGACTTGCTGATTCTTTTG 278 13 718 Antisense
AGATAACACATGGACCCTCATGCTC 225 67 770 Antisense
CGTATCCGTCTTCGTGCCAAAGATA 504 247 835 Antisense
GCTTCTTGAGGCTATTCGTATCCGG 431 305 864 Antisense
ACTCGGAGAACGTGTCCGCTTTGCA 410 97 895 Antisense
TGCAATCTTCACATACCTTTCTTAA 160 577 916 Antisense
Sequence Source Affymetrix Proprietary Database