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[181649_at]

Description F48E3.9 /REP_DB=WormBase Gene ID /WP=CE26615 /TR=Q9GPA4 /GB=AAG38886.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 14.2
(-2.5)
A 		20
(-1.6)
A 		10.6
(-3)
A 		51.2
(3)
A 		41
B 22.5
(0.3)
P 		36.3
(3)
P 		5.7
(-3)
A 		18.1
(-0.6)
A 		31
C 22.7
(-1.4)
A 		13.6
(-2.2)
A 		5.3
(-3)
A 		70.1
(3)
P 		65
avr 19.8
(-1.1) 		23.3
(-0.5) 		7.2
(-3) 		46.5
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 51.8
(3)
M 		0.8
(-3)
A 		19.9
(-0.8)
A 		24.5
(-0.2)
P 		28.9
(0.3)
A 		9.8
(-1.9)
A 		51
B 13.3
(-0.4)
A 		1.3
(-3)
A 		28.5
(3)
A 		27.2
(2.7)
A 		2.6
(-2.7)
A 		14.8
(-0)
A 		27
C 21.7
(-1.8)
A 		29.8
(-0.7)
A 		25.8
(-1.2)
M 		56.9
(3)
P 		13.1
(-3)
A 		12.8
(-3)
P 		44
avr 28.9
(1.3) 		10.6
(-3) 		24.7
(0.3) 		36.2
(3) 		14.9
(-2) 		12.5
(-2.6) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.2
(0.1)
A 		4.3
(-1.1)
A 		2.8
(-3)
A 		7.5
(3)
A 		5
B 7.2
(1.6)
P 		9
(3)
P 		1.3
(-3)
A 		3.9
(-1)
A 		8
C 7.5
(0.4)
A 		3.9
(-1.7)
A 		1.8
(-3)
A 		11.8
(3)
P 		10
avr 6.6
(1.8) 		5.7
(0.9) 		2
(-3) 		7.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 9.5
(3)
M 		0.3
(-3)
A 		4.3
(-0.4)
A 		6.2
(0.8)
P 		8.7
(2.5)
A 		2.4
(-1.6)
A 		9
B 4.6
(0.7)
A 		0.4
(-3)
A 		6.9
(2.7)
A 		7.2
(3)
A 		1.1
(-2.4)
A 		5.5
(1.5)
A 		7
C 8.1
(0.2)
A 		9.1
(1.1)
A 		6.6
(-1)
M 		11.4
(3)
P 		4.2
(-3)
A 		4.3
(-2.9)
P 		7
avr 7.4
(1.9) 		3.3
(-3) 		5.9
(0.1) 		8.3
(3) 		4.7
(-1.3) 		4.1
(-2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181649_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16763
Sequence Type Exemplar sequence
Representative Public ID F48E3.9 NCBI
Target Description F48E3.9 /REP_DB=WormBase Gene ID /WP=CE26615 /TR=Q9GPA4 /GB=AAG38886.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076863 NCBI Caenorhabditis elegans F48E3.9 (F48E3.9) mRNA, complete cds. 11/11 None
F48E3.9 ENSEMBL cdna:known chromosome:CEL140:X:7483434:7484726:1 gene:F48E3.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040279 8/11 Cross Hyb Matching Probes None
SNAP00000040268 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7483432-7484725(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48E3.9
Entrez Gene 185982 Entrez gene
SwissProt Q9GPA4 EMBL-EBI
WormBase CE26615 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG38886 Hypothetical protein F48E3.9 [Caenorhabditis elegans] ref|NP_509264.1| F48E3.9 [Caenorhabditis elegans] 1.0E-148
blast T16401 alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (EC 2.4.1.101) I F48E3.1 [similarity] - Caenorhabditis elegans 1.0E-114
blast CAE70219 Hypothetical protein CBG16699 [Caenorhabditis briggsae] 8.0E-84
Sequence
Target Sequence 
>C. ELEGANS:181649_AT
taaccacttcgataatttcatcattttcaggaaaggattcatgcatatattcaacaaaca
agagaatacgaactcacacaaatcaacgataaaaagctcatcgataaagtatgcgaataa
acctctaaaacaactcacacgcgtaatcgtttttcaggtgattgaagagaactcaagttt
gatcaaagaaaatgcgaaagtatcaactaagctcagccgccttgaaagtgttgattatac
gtataagcaaagagagctgaaggaagctcaaaataacagcgatttggtattggaactaaa
agcagctctgcaacaagagaagagttcttctcatggaatgctaaacaaaattgaaattat
gaggcaaaggtgtgaagacttggaaaaatcgattttggatcgtgataaaagtgaagatga
gaacattatggaaagaagtcgagttgaaaaggagctcaacgcacttcatgctctttccaa
atctttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACCACTTCGATAATTTCATCATT 220 639 348 Antisense
GGATTCATGCATATATTCAACAAAC 400 509 382 Antisense
GAATACGAACTCACACAAATCAACG 184 327 411 Antisense
AAACCTCTAAAACAACTCACACGCG 314 125 466 Antisense
CTCACACGCGTAATCGTTTTTCAGG 409 227 481 Antisense
AACTAAGCTCAGCCGCCTTGAAAGT 164 135 552 Antisense
GCTCAGCCGCCTTGAAAGTGTTGAT 461 299 558 Antisense
GTATTGGAACTAAAAGCAGCTCTGC 195 453 634 Antisense
GAAGAGTTCTTCTCATGGAATGCTA 267 339 666 Antisense
AGGAGCTCAACGCACTTCATGCTCT 611 55 797 Antisense
TTCATGCTCTTTCCAAATCTTTGTC 231 689 812 Antisense
Sequence Source Affymetrix Proprietary Database