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[181647_s_at]

Description F41G3.6 /REP_DB=WormBase Gene ID /WP=CE01290 /TR=Q20287 /GB=AAA81105.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 88      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 93      6grp_total > 88      4grp_total > 60      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 336.3
(3)
P 		279.4
(1)
P 		335.2
(3)
P 		164.2
(-3)
P 		172
B 259.5
(-3)
P 		340
(3)
P 		300.1
(0)
P 		315.1
(1.1)
P 		81
C 365.6
(3)
P 		320.6
(-0.1)
P 		343
(1.5)
P 		277.2
(-3)
P 		88
avr 320.5
(2.5) 		313.3
(2) 		326.1
(3) 		252.2
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 637
1 2 3 4 5 6 range
A 308
(-2.7)
P 		285.1
(-3)
P 		302.8
(-2.7)
P 		295.1
(-2.8)
P 		487.5
(0.1)
P 		678.2
(3)
P 		393
B 321.4
(-1.2)
P 		298.1
(-1.6)
P 		215
(-3)
P 		271.2
(-2.1)
P 		424.5
(0.5)
P 		576.8
(3)
P 		362
C 238.5
(-3)
P 		347.6
(-1.9)
P 		309.8
(-2.3)
P 		360.5
(-1.8)
P 		486.7
(-0.6)
P 		852.3
(3)
P 		614
avr 289.3
(-2.8) 		310.3
(-2.5) 		275.9
(-3) 		308.9
(-2.5) 		466.2
(-0.3) 		702.4
(3) 		427
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 122.5
(3)
P 		60.6
(-0.8)
P 		87.6
(0.9)
P 		24
(-3)
P 		99
B 82.7
(2.5)
P 		84
(3)
P 		69.5
(-2.1)
P 		67.1
(-3)
P 		17
C 121
(3)
P 		92.2
(0.7)
P 		119.5
(2.9)
P 		46.7
(-3)
P 		74
avr 108.7
(3) 		78.9
(0.2) 		92.2
(1.4) 		45.9
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 56.8
(-3)
P 		101.4
(-0.5)
P 		65.9
(-2.5)
P 		74.8
(-2)
P 		147.1
(2)
P 		165.1
(3)
P 		108
B 111.8
(-0.8)
P 		99.2
(-1.3)
P 		52.2
(-3)
P 		71.8
(-2.3)
P 		172.5
(1.4)
P 		215.1
(3)
P 		163
C 88.4
(-2.6)
P 		106.1
(-2.1)
P 		78.8
(-2.8)
P 		72.5
(-3)
P 		157.5
(-0.6)
P 		285.3
(3)
P 		213
avr 85.7
(-2.2) 		102.2
(-1.6) 		65.6
(-3) 		73
(-2.7) 		159
(0.6) 		221.8
(3) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181647_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5613
Sequence Type Exemplar sequence
Representative Public ID F41G3.6 NCBI
Target Description F41G3.6 /REP_DB=WormBase Gene ID /WP=CE01290 /TR=Q20287 /GB=AAA81105.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062976(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062976 NCBI Caenorhabditis elegans F41G3.6 (F41G3.6) mRNA, complete cds. 11/11 None
SNAP00000017939 ENSEMBL cdna:SNAP chromosome:CEL140:II:6742855:6744028:1 11/11 None
GENEFINDER00000017956 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6741671:6744028:1 11/11 None
F41G3.6 ENSEMBL cdna:known chromosome:CEL140:II:6742849:6744140:1 gene:F41G3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6741667-6744025(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41G3.6
Entrez Gene 174112 Entrez gene
SwissProt Q20287 EMBL-EBI
WormBase CE28933 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T16328 hypothetical protein F41G3.6 - Caenorhabditis elegans 0.0
blast AAK93856 Hypothetical protein F41G3.6 [Caenorhabditis elegans] ref|NP_495377.1| F41G3.6 [Caenorhabditis elegans] 1.0E-168
blast T16328 hypothetical protein F41G3.6 - Caenorhabditis elegans 1.0E-168
blast AAK93855 Hypothetical protein F41G3.14 [Caenorhabditis elegans] ref|NP_495376.1| F41G3.14 [Caenorhabditis elegans] 1.0E-139
blast CAE65953 Hypothetical protein CBG11134 [Caenorhabditis briggsae] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR001247 EMBL-EBI 3 exoribonuclease 1.6E-9
Sequence
Target Sequence 
>C. ELEGANS:181647_S_AT
catcacaactggtcccacgaggagaggcggtttccattcgcgacaaacccactctcccaa
ctgatcctcgaggtggcgactggaacacaggtgtcggaatcacacagacctgtcttttgc
tacgatatctctcacaatgctccctggaccaactttcaatcgatgagagagccaatgtcc
tgtttgctattcttcgcgtcttcagtgattctgacgaagtcgccgcatctccagatgccc
agaaatttgttcgtcgtatctattcgtcgggatcacgttatgatttaatcgatgctctcg
ctgcaattttcttccaactttcaaacgacattgcaacaatggcggacgctgttcgcacgc
tgtggagcatcacagaggatgagccacttgtaatgagactgacagttgaaattctgatgt
gtttatgccagagatctgaagttgtcgctaatcttccagagtttaagctgggcgatcaaa
tgtactgcaagcaagtgaaaatgatcattctcgatttgacgtctgacgcgcacgaacaag
ttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCACAACTGGTCCCACGAGGAGA 349 213 1130 Antisense
CGAGGAGAGGCGGTTTCCATTCGCG 582 249 1147 Antisense
TCCCAACTGATCCTCGAGGTGGCGA 84 597 1184 Antisense
TGTCTTTTGCTACGATATCTCTCAC 233 559 1240 Antisense
TCCCTGGACCAACTTTCAATCGATG 303 597 1270 Antisense
TGATTCTGACGAAGTCGCCGCATCT 659 563 1335 Antisense
TGTTCGTCGTATCTATTCGTCGGGA 642 557 1377 Antisense
TGTTCGCACGCTGTGGAGCATCACA 44 563 1479 Antisense
AAGTTGTCGCTAATCTTCCAGAGTT 629 155 1568 Antisense
CATTCTCGATTTGACGTCTGACGCG 656 215 1635 Antisense
GTCTGACGCGCACGAACAAGTTCCA 281 471 1650 Antisense
Sequence Source Affymetrix Proprietary Database