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[181646_at]

Description T24H7.4 /REP_DB=WormBase Gene ID /WP=CE02886 /TR=Q22756 /GB=AAA68350.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 94      6grp_total > 86      4grp_total > 08      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 288.1
(-3)
P 		340.8
(-2.1)
P 		381.4
(-1.3)
P 		625.7
(3)
P 		338
B 313.3
(-3)
P 		323.3
(-2.7)
P 		462.4
(1.2)
P 		525.9
(3)
P 		213
C 323.5
(-2.8)
P 		313
(-3)
P 		333.2
(-2.7)
P 		696.2
(3)
P 		383
avr 308.3
(-3) 		325.7
(-2.7) 		392.3
(-1.4) 		615.9
(3) 		308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 653
1 2 3 4 5 6 range
A 205.7
(-3)
P 		443
(0)
P 		453.5
(0.2)
P 		620
(2.3)
P 		600.7
(2)
P 		676
(3)
P 		470
B 329.8
(-3)
P 		514.7
(-0.7)
P 		556.5
(-0.2)
P 		442.1
(-1.6)
P 		742.4
(2.1)
P 		817.1
(3)
P 		487
C 271
(-3)
P 		539.8
(-0.3)
P 		445.6
(-1.2)
P 		492
(-0.7)
P 		657.2
(0.9)
P 		858.6
(3)
P 		588
avr 268.8
(-3) 		499.2
(-0.3) 		485.2
(-0.5) 		518
(-0.1) 		666.8
(1.6) 		783.9
(3) 		515
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 104.9
(3)
P 		74
(-3)
P 		99.7
(2)
P 		91.6
(0.4)
P 		31
B 99.9
(0.7)
P 		79.9
(-3)
P 		107.2
(2.1)
P 		112.1
(3)
P 		32
C 107.1
(0.7)
P 		90
(-3)
P 		116.1
(2.7)
P 		117.4
(3)
P 		27
avr 104
(2.2) 		81.3
(-3) 		107.7
(3) 		107
(2.8) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 37.9
(-3)
P 		157.6
(2)
P 		98.8
(-0.5)
P 		157.3
(2)
P 		181.3
(3)
P 		164.6
(2.3)
P 		143
B 114.8
(-3)
P 		171.3
(-1.2)
P 		135.1
(-2.4)
P 		117.1
(-2.9)
P 		301.6
(2.9)
P 		304.7
(3)
P 		190
C 100.4
(-3)
P 		164.7
(-0.9)
P 		113.4
(-2.5)
P 		98.9
(-3)
P 		212.7
(0.6)
P 		287.4
(3)
P 		189
avr 84.4
(-3) 		164.5
(-0.1) 		115.8
(-1.9) 		124.4
(-1.6) 		231.9
(2.3) 		252.2
(3) 		168
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181646_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4903
Sequence Type Exemplar sequence
Representative Public ID T24H7.4 NCBI
Target Description T24H7.4 /REP_DB=WormBase Gene ID /WP=CE02886 /TR=Q22756 /GB=AAA68350.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062846(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062846 NCBI Caenorhabditis elegans T24H7.4 (T24H7.4) mRNA, complete cds. 11/11 None
SNAP00000030999 ENSEMBL cdna:SNAP chromosome:CEL140:II:6245703:6246117:1 11/11 None
GENEFINDER00000031007 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6245703:6246117:1 11/11 None
T24H7.4 ENSEMBL cdna:known chromosome:CEL140:II:6245703:6246117:1 gene:T24H7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6245699-6246114(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24H7.4
Entrez Gene 188869 Entrez gene
SwissProt Q22756 EMBL-EBI
WormBase CE02886 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68350 Hypothetical protein T24H7.4 [Caenorhabditis elegans] ref|NP_495247.1| T24H7.4 [Caenorhabditis elegans] 4.0E-53
blast CAE59270 Hypothetical protein CBG02602 [Caenorhabditis briggsae] 1.0E-35
Sequence
Target Sequence 
>C. ELEGANS:181646_AT
gaccggagttgatgacatatcgtcaaatgtgcataagctggtgggagtcaccgcaggaat
gaatactgcagcgtccacaggaccaatgaatttggttctcgataagtgttccgttgtgct
cgaagaattgagaacaattcaaattctaacagagacacattcagaaggactcagcgaaca
gctgaaaatgacagaaaagaatatcctcgaaatggaaaatttgttcgatcaaattgacca
gctttgcttgtttgttcaaaaggcaaaatccgatctcgacaagctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCGGAGTTGATGACATATCGTCA 426 383 15 Antisense
AATGTGCATAAGCTGGTGGGAGTCA 93 163 40 Antisense
GTGGGAGTCACCGCAGGAATGAATA 339 489 55 Antisense
GAATGAATACTGCAGCGTCCACAGG 24 327 71 Antisense
GCGTCCACAGGACCAATGAATTTGG 543 289 85 Antisense
CTCGATAAGTGTTCCGTTGTGCTCG 605 229 112 Antisense
GTGTTCCGTTGTGCTCGAAGAATTG 282 485 120 Antisense
GACACATTCAGAAGGACTCAGCGAA 351 367 168 Antisense
GTTCGATCAAATTGACCAGCTTTGC 321 443 237 Antisense
TGACCAGCTTTGCTTGTTTGTTCAA 450 569 249 Antisense
GGCAAAATCCGATCTCGACAAGCTG 470 533 276 Antisense
Sequence Source Affymetrix Proprietary Database