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[181644_at]

Description T21C9.13 /REP_DB=WormBase Gene ID /WP=CE06482 /TR=Q22648 /GB=CAA97340.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 4.7
(-2.8)
A 		2.4
(-3)
A 		3.9
(-2.9)
A 		75.5
(3)
A 		73
B 2.9
(-3)
A 		6
(-2.8)
A 		2.7
(-3)
A 		88.7
(3)
M 		86
C 13.8
(-2.4)
A 		4.2
(-3)
A 		3.7
(-3)
A 		112.1
(3)
P 		108
avr 7.1
(-2.7) 		4.2
(-2.9) 		3.4
(-3) 		92.1
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1996
1 2 3 4 5 6 range
A 20.6
(-3)
A 		10.8
(-3)
A 		73.1
(-2.8)
P 		109.1
(-2.7)
P 		899.4
(0.1)
P 		1712.3
(3)
P 		1702
B 23.9
(-3)
A 		22.6
(-3)
A 		42.9
(-2.9)
A 		118.2
(-2.7)
P 		960.8
(-0.2)
P 		2006.6
(3)
P 		1984
C 24.5
(-3)
A 		49
(-2.9)
A 		46.1
(-2.9)
A 		115.7
(-2.7)
P 		932.8
(0)
P 		1820.9
(3)
P 		1796
avr 23
(-3) 		27.5
(-3) 		54
(-2.9) 		114.3
(-2.7) 		931
(-0) 		1846.6
(3) 		1824
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.7
(-2.3)
A 		0.5
(-3)
A 		1
(-2.7)
A 		11.1
(3)
A 		11
B 0.9
(-2.9)
A 		1.5
(-2.7)
A 		0.6
(-3)
A 		18.9
(3)
M 		18
C 4.6
(-1.8)
A 		1.2
(-3)
A 		1.3
(-3)
A 		18.9
(3)
P 		18
avr 2.4
(-2.5) 		1.1
(-3) 		1
(-3) 		16.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 745
1 2 3 4 5 6 range
A 3.8
(-3)
A 		3.8
(-3)
A 		15.9
(-2.8)
P 		27.7
(-2.7)
P 		271.4
(0.9)
P 		416.9
(3)
P 		413
B 8.3
(-3)
A 		7.5
(-3)
A 		10.4
(-3)
A 		31.3
(-2.8)
P 		390.4
(0.1)
P 		748.3
(3)
P 		741
C 9.1
(-3)
A 		14.9
(-2.9)
A 		11.7
(-3)
A 		23.3
(-2.9)
P 		301.8
(-0.1)
P 		609.6
(3)
P 		601
avr 7.1
(-3) 		8.7
(-3) 		12.7
(-2.9) 		27.4
(-2.8) 		321.2
(0.2) 		591.6
(3) 		585
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181644_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12393
Sequence Type Exemplar sequence
Representative Public ID T21C9.13 NCBI
Target Description T21C9.13 /REP_DB=WormBase Gene ID /WP=CE06482 /TR=Q22648 /GB=CAA97340.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073320(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073320 NCBI Caenorhabditis elegans T21C9.13 (T21C9.13) mRNA, complete cds. 11/11 None
SNAP00000011991 ENSEMBL cdna:SNAP chromosome:CEL140:V:10600130:10601012:1 11/11 None
GENEFINDER00000011993 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10600130:10601012:1 11/11 None
T21C9.13 ENSEMBL cdna:known chromosome:CEL140:V:10600110:10601179:1 gene:T21C9.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10600129-10601012(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T21C9.13
Entrez Gene 179480 Entrez gene
SwissProt Q22648 EMBL-EBI
WormBase CE35621 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97340 Hypothetical protein T21C9.13 [Caenorhabditis elegans] ref|NP_505721.2| T21C9.13 [Caenorhabditis elegans] 1.0E-133
blast CAE64857 Hypothetical protein CBG09653 [Caenorhabditis briggsae] 7.0E-97
blast CAA97338 Hypothetical protein T21C9.11 [Caenorhabditis elegans] ref|NP_505720.1| T21C9.11 [Caenorhabditis elegans] 3.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505721.2 4 74-96,111-133,138-160,175-197
T21C9.13 4 74-96,111-133,138-160,175-197
SNAP00000011991 4 74-96,111-133,138-160,175-197
GENEFINDER00000011993 4 74-96,111-133,138-160,175-197
Sequence
Target Sequence 
>C. ELEGANS:181644_AT
cgccacgagtagttcttctttatgcatttgctgcaattctgactattggatactatgcag
gatctttcgtttttcagtatggaaactataccccaaggaagaaaaacaatatttttgatg
aagcttttctgactcgtgtcgtgattgtgcaatggctgatacttctcgctatactgtttt
ccggagtatttctctaccgccgtctcttcatgccactctacattttccttgcagtcatgg
ccacaaacggaactctcgtactttttatgctcaaagtgaagcagctagttgatgcacgga
taaacatcagtgagttgagcgaaccagaattttatttgagaaaacatttttcagtggaca
tctcgttgaatatgctcggccttctactattctgcgcagttttacacgatattgtctatt
tctacgcaatccatttgaagttggttgagtcacgtcccgtccttgttcctggcttccgcg
tatacgatgcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCACGAGTAGTTCTTCTTTATGC 248 257 221 Antisense
TATGCAGGATCTTTCGTTTTTCAGT 665 655 274 Antisense
GATGAAGCTTTTCTGACTCGTGTCG 138 411 337 Antisense
GTGCAATGGCTGATACTTCTCGCTA 525 481 367 Antisense
ACTTCTCGCTATACTGTTTTCCGGA 462 103 381 Antisense
TTTTCCTTGCAGTCATGGCCACAAA 335 677 443 Antisense
CGGAACTCTCGTACTTTTTATGCTC 405 241 468 Antisense
GACATCTCGTTGAATATGCTCGGCC 602 369 577 Antisense
GTCTATTTCTACGCAATCCATTTGA 704 467 634 Antisense
TGAAGTTGGTTGAGTCACGTCCCGT 602 571 656 Antisense
TGGCTTCCGCGTATACGATGCAACA 7 545 690 Antisense
Sequence Source Affymetrix Proprietary Database