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[181643_at]

Description C18G1.1 /REP_DB=WormBase Gene ID /WP=CE17417 /TR=O61925 /GB=AAC17757.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 13      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 70      6grp_total > 13      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 351
1 2 3 4 range
A 427
(3)
P 		322.5
(0.4)
P 		183.4
(-3)
P 		200.5
(-2.6)
P 		244
B 520.7
(3)
P 		264.2
(-1.9)
P 		221.6
(-2.7)
P 		205.6
(-3)
P 		315
C 419.3
(3)
P 		269.1
(-0.6)
P 		169.9
(-3)
P 		211.2
(-2)
P 		249
avr 455.7
(3) 		285.3
(-0.9) 		191.6
(-3) 		205.8
(-2.7) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 383
1 2 3 4 5 6 range
A 437.3
(3)
P 		383.6
(2.1)
P 		313
(0.9)
P 		228.4
(-0.5)
P 		191.3
(-1.1)
P 		76.1
(-3)
P 		361
B 458.9
(3)
P 		430.1
(2.5)
P 		338.7
(0.9)
P 		284.5
(-0.1)
P 		198.5
(-1.6)
P 		118.5
(-3)
P 		340
C 377.9
(2.5)
P 		400.9
(3)
P 		302.8
(1)
P 		259.1
(0)
P 		153.6
(-2.2)
P 		113.3
(-3)
P 		288
avr 424.7
(3) 		404.9
(2.6) 		318.2
(1) 		257.3
(-0.1) 		181.1
(-1.5) 		102.6
(-3) 		322
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 155.5
(3)
P 		70
(-1.1)
P 		47.9
(-2.1)
P 		29.3
(-3)
P 		126
B 166
(3)
P 		65.3
(-1.9)
P 		51.4
(-2.6)
P 		43.8
(-3)
P 		122
C 138.8
(3)
P 		77.4
(-0.6)
P 		59.2
(-1.6)
P 		35.6
(-3)
P 		103
avr 153.4
(3) 		70.9
(-1.2) 		52.8
(-2.2) 		36.2
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 80.6
(0.2)
P 		136.4
(3)
P 		68.2
(-0.5)
P 		57.9
(-1)
P 		57.7
(-1)
P 		18.5
(-3)
P 		118
B 159.7
(3)
P 		143.2
(2.1)
P 		82.2
(-1)
P 		75.4
(-1.4)
P 		80.7
(-1.1)
P 		44.2
(-3)
P 		116
C 140.1
(3)
P 		122.3
(2)
P 		77.1
(-0.7)
P 		52.1
(-2.2)
P 		49.7
(-2.3)
P 		37.9
(-3)
P 		102
avr 126.8
(2.6) 		134
(3) 		75.8
(-0.5) 		61.8
(-1.3) 		62.7
(-1.3) 		33.5
(-3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181643_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15180
Sequence Type Exemplar sequence
Representative Public ID C18G1.1 NCBI
Target Description C18G1.1 /REP_DB=WormBase Gene ID /WP=CE17417 /TR=O61925 /GB=AAC17757.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071883(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071883 NCBI Caenorhabditis elegans C18G1.1 (C18G1.1) mRNA, complete cds. 11/11 None
SNAP00000018233 ENSEMBL cdna:SNAP chromosome:CEL140:V:4777777:4779715:1 11/11 None
GENEFINDER00000018241 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4777777:4779715:1 11/11 None
C18G1.1 ENSEMBL cdna:known chromosome:CEL140:V:4779041:4779721:1 gene:C18G1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4779040-4779721(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18G1.1
Entrez Gene 182794 Entrez gene
SwissProt O61925 EMBL-EBI
WormBase CE17417 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE64187 Hypothetical protein CBG08814 [Caenorhabditis briggsae] 2.0E-63
blast AAC17757 Hypothetical protein C18G1.1 [Caenorhabditis elegans] ref|NP_504284.1| C18G1.1 [Caenorhabditis elegans] 2.0E-62
blast CAE64187 Hypothetical protein CBG08814 [Caenorhabditis briggsae] 1.0E-61
blast AAC17757 Hypothetical protein C18G1.1 [Caenorhabditis elegans] ref|NP_504284.1| C18G1.1 [Caenorhabditis elegans] 2.0E-57
blast AAC17757 Hypothetical protein C18G1.1 [Caenorhabditis elegans] ref|NP_504284.1| C18G1.1 [Caenorhabditis elegans] 3.0E-57
blast CAE64187 Hypothetical protein CBG08814 [Caenorhabditis briggsae] 1.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504284.1 2 28-50,71-93
C18G1.1 2 28-50,71-93
SNAP00000018233 4 38-60,64-81,93-115,138-160
GENEFINDER00000018241 4 66-88,92-109,121-143,166-188
Sequence
Target Sequence 
>C. ELEGANS:181643_AT
ctcgtaccagttttggctcttttcttcgcgttatgctcaattcgaggcgactatcaaagt
acgcaatggcccattctcttcattgctctcatcggaattctcctcaaaatcgcggcgatt
gtcgtttatatttcgttgttcccgctcaaagattattcgagaaaacccggaaggggaccg
caaagaaccgaagcagaaatgaagcattaccgtacagtattctacattattctctcgacg
gtagagttcttcattctcattattggagtttgcttgaaatggcaacttgtcacacttcat
caaagagagcagatccaaaaaagaagatctactctggtatcaagtcgcccattaatcgaa
ggagaacccggcgcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGTACCAGTTTTGGCTCTTTTCT 323 233 16 Antisense
TTTTCTTCGCGTTATGCTCAATTCG 180 677 35 Antisense
ATCAAAGTACGCAATGGCCCATTCT 89 27 68 Antisense
TCTCTTCATTGCTCTCATCGGAATT 294 613 90 Antisense
ATCGGAATTCTCCTCAAAATCGCGG 199 33 106 Antisense
TTTCGTTGTTCCCGCTCAAAGATTA 443 667 146 Antisense
GTATTCTACATTATTCTCTCGACGG 246 453 232 Antisense
GACGGTAGAGTTCTTCATTCTCATT 5 377 252 Antisense
ATGGCAACTTGTCACACTTCATCAA 323 53 294 Antisense
GATCTACTCTGGTATCAAGTCGCCC 557 419 341 Antisense
TAATCGAAGGAGAACCCGGCGCAGG 606 635 368 Antisense
Sequence Source Affymetrix Proprietary Database