[Home] | [Total List]

[181642_at]

Description T20G5.12 /REP_DB=WormBase Gene ID /WP=CE13854 /TR=O18095 /GB=CAA83014.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_high_8_8 > 21      6grp_highest_nonorm > 92      6grp_total > 84      4grp_total > 26      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 69.1
(-3)
P 		94.3
(2.5)
P 		69.8
(-2.8)
P 		96.8
(3)
P 		28
B 62.3
(-3)
A 		116.8
(3)
P 		77
(-1.4)
P 		107.4
(2)
P 		55
C 68
(-2.9)
P 		66.5
(-3)
P 		74.9
(-2.3)
P 		144
(3)
P 		78
avr 66.5
(-3) 		92.5
(0.1) 		73.9
(-2.1) 		116.1
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 599
1 2 3 4 5 6 range
A 107.8
(-2.3)
P 		46.6
(-3)
P 		77.6
(-2.7)
P 		608.9
(3)
P 		547.5
(2.3)
P 		326.5
(-0)
P 		562
B 78.1
(-3)
P 		85.6
(-2.9)
P 		75.5
(-3)
P 		540.1
(1.9)
P 		645.5
(3)
P 		343
(-0.2)
P 		570
C 78.9
(-2.8)
P 		71.1
(-2.9)
P 		64.8
(-3)
P 		593.5
(3)
P 		541
(2.4)
P 		318.9
(-0.1)
P 		529
avr 88.3
(-2.8) 		67.8
(-3) 		72.6
(-2.9) 		580.8
(3) 		578
(3) 		329.5
(0.1) 		513
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 25.2
(3)
P 		20.5
(0.4)
P 		18.2
(-0.8)
P 		14.2
(-3)
P 		11
B 19.9
(-1.9)
A 		28.8
(3)
P 		17.8
(-3)
P 		22.9
(-0.2)
P 		11
C 22.5
(-0.1)
P 		19.1
(-3)
P 		26.1
(3)
P 		24.3
(1.5)
P 		7
avr 22.5
(2.2) 		22.8
(3) 		20.7
(-2.5) 		20.5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 19.9
(-2.9)
P 		16.6
(-3)
P 		16.9
(-3)
P 		154.4
(2.6)
P 		165.2
(3)
P 		79.5
(-0.5)
P 		149
B 27.2
(-2.8)
P 		28.5
(-2.7)
P 		18.3
(-3)
P 		143
(0.1)
P 		262.3
(3)
P 		127.9
(-0.3)
P 		244
C 29.3
(-2.5)
P 		21.7
(-2.8)
P 		16.5
(-3)
P 		119.4
(0.9)
P 		175.1
(3)
P 		106.7
(0.4)
P 		159
avr 25.5
(-2.7) 		22.3
(-2.8) 		17.2
(-3) 		138.9
(1) 		200.9
(3) 		104.7
(-0.1) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181642_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6117
Sequence Type Exemplar sequence
Representative Public ID T20G5.12 NCBI
Target Description T20G5.12 /REP_DB=WormBase Gene ID /WP=CE13854 /TR=O18095 /GB=CAA83014.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066858(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066858 NCBI Caenorhabditis elegans T20G5.12 (T20G5.12) mRNA, complete cds. 11/11 None
SNAP00000033302 ENSEMBL cdna:SNAP chromosome:CEL140:III:10201512:10202417:1 11/11 None
GENEFINDER00000033352 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10201512:10202417:1 11/11 None
T20G5.12 ENSEMBL cdna:known chromosome:CEL140:III:10201512:10202417:1 gene:T20G5.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10201507-10202413(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20G5.12
Entrez Gene 188662 Entrez gene
SwissProt O18095 EMBL-EBI
WormBase CE13854 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83014 Hypothetical protein T20G5.12 [Caenorhabditis elegans] ref|NP_499259.1| T20G5.12 [Caenorhabditis elegans] 1.0E-108
blast CAE64971 Hypothetical protein CBG09805 [Caenorhabditis briggsae] 6.0E-91
blast CAE69563 Hypothetical protein CBG15775 [Caenorhabditis briggsae] 1.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR002602 EMBL-EBI Protein of unknown function DB 1.6E-61
Sequence
Target Sequence 
>C. ELEGANS:181642_AT
tcctcattctcaccgatgcatgtggatctagtggtgcatgtggttgctgtggttgccgag
caaaagcaaaggcgagagctgcaaaacgagttagtggagatttggttcaagagtttgatg
gaaaggatgatggaaatatttttggactcaaagtctggaatgatacgaaaactccaatca
ctgaaaagagcattcagttgttgacaaatcctaaccacttgttccatgtatgctgtgagg
aacgacagttgcctcccgcatgtgttcagaaatgccattttaatgtttataacaaaggag
tgctggaatcaatgttctttggttcaagtgaatgcccgattgaattcctgccagaaatgc
aattttgtgcggctcaaggaaaagatcatagccagtgttgctcacaaagtcaggtggatg
caacgacggctggaagtaaatgtctaaccttctgcgatcaaacacccgatctctacactc
caattgattacagctatgcgccttgcctagacaggttcgaggacatgaaacgatgcttct
atgataatgtgaagtcggatgcaatcacacatttcgaggcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCATTCTCACCGATGCATGTGG 312 591 47 Antisense
GGTGCATGTGGTTGCTGTGGTTGCC 326 501 79 Antisense
TAACCACTTGTTCCATGTATGCTGT 41 637 258 Antisense
TGTGAGGAACGACAGTTGCCTCCCG 623 553 280 Antisense
GTGAATGCCCGATTGAATTCCTGCC 336 481 374 Antisense
GATCATAGCCAGTGTTGCTCACAAA 12 421 430 Antisense
GTAAATGTCTAACCTTCTGCGATCA 470 461 482 Antisense
TGCGATCAAACACCCGATCTCTACA 125 583 499 Antisense
ATTGATTACAGCTATGCGCCTTGCC 486 5 529 Antisense
CGCCTTGCCTAGACAGGTTCGAGGA 552 257 545 Antisense
GATGCAATCACACATTTCGAGGCGA 626 411 604 Antisense
Sequence Source Affymetrix Proprietary Database