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[181641_at]

Description C29F5.7 /REP_DB=WormBase Gene ID /WP=CE02514 /TR=Q18311 /GB=AAC46826.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 90      6grp_total > 48      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 432
1 2 3 4 range
A 151.4
(-2.5)
P 		116.8
(-3)
P 		120.6
(-2.9)
P 		545
(3)
P 		428
B 190.4
(-1.9)
P 		154.7
(-2.4)
P 		112.9
(-3)
P 		536.7
(3)
P 		424
C 180.8
(-1.9)
P 		164.5
(-2.2)
P 		117.1
(-3)
P 		465.9
(3)
P 		349
avr 174.2
(-2.1) 		145.3
(-2.6) 		116.9
(-3) 		515.9
(3) 		399

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 184.9
(1.2)
P 		134.3
(-1.2)
P 		121.9
(-1.8)
P 		95.7
(-3)
P 		139.8
(-0.9)
P 		223.6
(3)
P 		128
B 189.1
(2.3)
P 		167.8
(0.7)
P 		117.4
(-3)
P 		136.1
(-1.6)
P 		136.1
(-1.6)
P 		198.4
(3)
P 		81
C 186.3
(2)
P 		190.2
(2.3)
P 		103.8
(-3)
P 		132.8
(-1.2)
P 		118.2
(-2.1)
P 		202
(3)
P 		98
avr 186.8
(1.6) 		164.1
(0.2) 		114.4
(-3) 		121.5
(-2.5) 		131.4
(-1.9) 		208
(3) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 55.1
(0.3)
P 		25.4
(-3)
P 		31.5
(-2.3)
P 		79.8
(3)
P 		54
B 60.7
(-0.7)
P 		38.2
(-2.2)
P 		26.2
(-3)
P 		114.4
(3)
P 		88
C 59.9
(0)
P 		47.3
(-2)
P 		40.8
(-3)
P 		78.6
(3)
P 		38
avr 58.6
(-0.3) 		37
(-2.6) 		32.8
(-3) 		90.9
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 34.1
(-1)
P 		47.8
(1.7)
P 		26.5
(-2.6)
P 		24.3
(-3)
P 		42.2
(0.6)
P 		54.4
(3)
P 		30
B 65.8
(1.9)
P 		55.9
(0.6)
P 		28.5
(-3)
P 		36.1
(-2)
P 		55.3
(0.5)
P 		74
(3)
P 		46
C 69.1
(3)
P 		58
(1.4)
P 		26.4
(-3)
P 		26.7
(-3)
P 		38.3
(-1.3)
P 		67.6
(2.8)
P 		43
avr 56.3
(1.6) 		53.9
(1.2) 		27.1
(-3) 		29
(-2.7) 		45.3
(-0.1) 		65.3
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5335
Sequence Type Exemplar sequence
Representative Public ID C29F5.7 NCBI
Target Description C29F5.7 /REP_DB=WormBase Gene ID /WP=CE02514 /TR=Q18311 /GB=AAC46826.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062867(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062867 NCBI Caenorhabditis elegans C29F5.7 (C29F5.7) mRNA, complete cds. 11/11 None
SNAP00000032525 ENSEMBL cdna:SNAP chromosome:CEL140:II:6308362:6309227:-1 11/11 None
GENEFINDER00000032528 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6308362:6309271:-1 11/11 None
C29F5.7 ENSEMBL cdna:known chromosome:CEL140:II:6308362:6309230:-1 gene:C29F5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6308358-6309227(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F5.7
Entrez Gene 183015 Entrez gene
SwissProt Q18311 EMBL-EBI
WormBase CE02514 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15671 oxygen transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_495268 C29F5.7 [Caenorhabditis elegans] gb|AAC46826.1| Hypothetical protein C29F5.7 [Caenorhabditis elegans] 1.0E-111
blast NP_495268 C29F5.7 [Caenorhabditis elegans] gb|AAC46826.1| Hypothetical protein C29F5.7 [Caenorhabditis elegans] 1.0E-110
blast CAE59289 Hypothetical protein CBG02622 [Caenorhabditis briggsae] 1.0E-106
blast CAE59289 Hypothetical protein CBG02622 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR000971 EMBL-EBI Globin 2.6E-24
Pfam IPR000971 EMBL-EBI Globin 2.6E-24
Pfam IPR000971 EMBL-EBI Globin 2.6E-24
Sequence
Target Sequence 
>C. ELEGANS:181641_AT
atgggcttgttgtcaacgatccgcggaaagaaggaaccagtggttggaaatggaattggc
tcagcacaagttggaccattgaatgctaaaacaaagaaattggtgattcaagaatggcca
agagttcttgctcaatgccctgagctcttcacagaaatctggcacaaatcggctacacga
tccacttcaatcaaactggcatttggaatcgcagaaaatgagagcccaatgcaaaatgca
gcatttttgggtctttcttcaacaatccaagcattcttctacaaattgatcatcacatat
gagcttaatgatgatcaagtgagagaagcttgtgaacaattgggagcccggcatgttgat
ttcatttctcgtggattcaattcacatttctgggatatattcttggtttgcatggcagag
aagattgatgagacactttcagcttatataccagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGCTTGTTGTCAACGATCCGCG 137 51 16 Antisense
CAAGAGTTCTTGCTCAATGCCCTGA 60 185 134 Antisense
AATGCCCTGAGCTCTTCACAGAAAT 405 167 149 Antisense
AATCTGGCACAAATCGGCTACACGA 598 169 171 Antisense
GCTACACGATCCACTTCAATCAAAC 133 303 187 Antisense
AATGCAGCATTTTTGGGTCTTTCTT 647 165 250 Antisense
GGGTCTTTCTTCAACAATCCAAGCA 564 497 264 Antisense
GAACAATTGGGAGCCCGGCATGTTG 30 353 349 Antisense
GGCATGTTGATTTCATTTCTCGTGG 308 537 365 Antisense
GATATATTCTTGGTTTGCATGGCAG 183 427 409 Antisense
GACACTTTCAGCTTATATACCAGAC 455 367 447 Antisense
Sequence Source Affymetrix Proprietary Database