[Home] | [Total List]

[181640_at]

Description B0205.4 /REP_DB=WormBase Gene ID /WP=CE26847 /TR=O61739 /GB=AAC16988.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 32
(-3)
A 		95.8
(1.6)
A 		116
(3)
A 		59.1
(-1.1)
A 		84
B 63.1
(-0.4)
A 		104.8
(3)
A 		84.3
(1.3)
A 		30.3
(-3)
A 		75
C 6
(-3)
A 		92
(2)
A 		108.4
(3)
M 		56.4
(-0)
A 		102
avr 33.7
(-3) 		97.5
(2.5) 		102.9
(3) 		48.6
(-1.7) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 64.7
(-0.9)
A 		129.6
(3)
A 		111.1
(1.9)
A 		126.2
(2.8)
M 		94.6
(0.9)
A 		28.5
(-3)
A 		101
B 103
(1.1)
A 		111.9
(1.7)
P 		77.9
(-0.9)
A 		94.2
(0.4)
P 		128.3
(3)
M 		50
(-3)
A 		78
C 83.9
(-0.9)
A 		118
(1)
A 		107.4
(0.4)
A 		151.9
(3)
P 		106.7
(0.4)
P 		48.3
(-3)
A 		104
avr 83.9
(0.1) 		119.8
(2.7) 		98.8
(1.1) 		124.1
(3) 		109.9
(2) 		42.3
(-3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 11.6
(-2.2)
A 		20.8
(0.4)
A 		30.3
(3)
A 		8.7
(-3)
A 		22
B 20.1
(1.2)
A 		25.9
(3)
A 		19.5
(1)
A 		6.5
(-3)
A 		19
C 2
(-3)
A 		26.5
(1.1)
A 		37.8
(3)
M 		9.5
(-1.7)
A 		36
avr 11.2
(-2.1) 		24.4
(1.6) 		29.2
(3) 		8.2
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 11.9
(-2.2)
A 		46.1
(3)
A 		24.2
(-0.4)
A 		32
(0.8)
M 		28.5
(0.3)
A 		6.9
(-3)
A 		39
B 35.9
(0.1)
A 		37.3
(0.3)
P 		18.9
(-2.9)
A 		25
(-1.9)
P 		52.1
(3)
M 		18.6
(-3)
A 		34
C 31.1
(1.5)
A 		36
(3)
A 		27.3
(0.4)
A 		30.5
(1.3)
P 		34.5
(2.5)
P 		16.2
(-3)
A 		20
avr 26.3
(-0.1) 		39.8
(3) 		23.5
(-0.8) 		29.2
(0.5) 		38.4
(2.7) 		13.9
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181640_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2155
Sequence Type Exemplar sequence
Representative Public ID B0205.4 NCBI
Target Description B0205.4 /REP_DB=WormBase Gene ID /WP=CE26847 /TR=O61739 /GB=AAC16988.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060413(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060413 NCBI Caenorhabditis elegans B0205.4 (B0205.4) mRNA, complete cds. 11/11 None
SNAP00000024673 ENSEMBL cdna:SNAP chromosome:CEL140:I:10749558:10752278:-1 10/11 None
GENEFINDER00000024678 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10749558:10752388:-1 10/11 None
B0205.4 ENSEMBL cdna:known chromosome:CEL140:I:10749558:10752564:-1 gene:B0205.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10749488-10753339(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0205.4
Entrez Gene 172980 Entrez gene
SwissProt O61739 EMBL-EBI
WormBase CE26847 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC16988 Hypothetical protein B0205.4 [Caenorhabditis elegans] ref|NP_492814.1| B0205.4 [Caenorhabditis elegans] 0.0
blast CAE67359 Hypothetical protein CBG12822 [Caenorhabditis briggsae] 1.0E-179
blast CAE67359 Hypothetical protein CBG12822 [Caenorhabditis briggsae] 1.0E-172
blast AAC16988 Hypothetical protein B0205.4 [Caenorhabditis elegans] ref|NP_492814.1| B0205.4 [Caenorhabditis elegans] 1.0E-106
blast CAE67359 Hypothetical protein CBG12822 [Caenorhabditis briggsae] 1.0E-94
blast AAF25581 alpha(1,2)fucosyltransferase [Macaca fascicularis] 2.0E-11
blast AAF25581 alpha(1,2)fucosyltransferase [Macaca fascicularis] 7.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 1.0E-126
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 2.7E-13
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 2.8E-113
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 1.4E-42
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 5.1E-113
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492814.1 1 9-28
B0205.4 1 9-28
GENEFINDER00000024678 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:181640_AT
gtgactttccaactacgggtggacgaatttctggaaaatgttggaatttctttgacagtc
cgaaatgcaagagttatcgagacaaatgtggcaaatgatgatcaagctttggaattacct
gaggaagatgcattcgcgaaaacaatgatggttggtgttcatattcgtcatggaatggat
atttcaatgaattcccgtaatcgaatacatggacacgtggatacaccaattgaatattat
aaacgagccatccaacagatttcaaaaatttatgagaatgtggcatttattatctgctct
gataacgtggcttgggcgagacggaatcttaaactgggaaaagaaactctacatttcttc
tgtccgggacctcgagaagttgacatggcaattctaaaatcttgtgatagtgttattatt
tcaactggaacttttggatggtggagtgcatatttaaatgtcaatgcatcaccggatgta
tattactacaaacactggccagcgccgggatctgtgatggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACTTTCCAACTACGGGTGGACG 184 459 769 Antisense
GTTGGAATTTCTTTGACAGTCCGAA 170 435 808 Antisense
GATGGTTGGTGTTCATATTCGTCAT 21 409 915 Antisense
ATGTGGCATTTATTATCTGCTCTGA 90 51 1046 Antisense
TCTGCTCTGATAACGTGGCTTGGGC 218 601 1061 Antisense
GTGGCTTGGGCGAGACGGAATCTTA 384 491 1075 Antisense
TTTCTTCTGTCCGGGACCTCGAGAA 241 671 1122 Antisense
GGGACCTCGAGAAGTTGACATGGCA 233 495 1134 Antisense
TAAATGTCAATGCATCACCGGATGT 326 633 1223 Antisense
TATTACTACAAACACTGGCCAGCGC 663 661 1249 Antisense
CCAGCGCCGGGATCTGTGATGGAGA 348 271 1267 Antisense
Sequence Source Affymetrix Proprietary Database