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[181639_s_at]

Description T15D6.12 /REP_DB=WormBase Gene ID /WP=CE13702 /TR=O02319 /GB=CAB05625.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 11.6
(-2)
A 		3.3
(-3)
A 		5
(-2.8)
A 		51.1
(3)
A 		48
B 2.5
(-2.8)
A 		13.8
(-0.4)
A 		1.4
(-3)
A 		29.6
(3)
A 		28
C 3
(-2.7)
A 		18.2
(-0.4)
A 		0.9
(-3)
A 		41.4
(3)
A 		41
avr 5.7
(-2.5) 		11.8
(-1.5) 		2.4
(-3) 		40.7
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 5.6
(0.1)
A 		10
(3)
A 		0.9
(-3)
A 		3.1
(-1.5)
A 		4.5
(-0.6)
A 		9.3
(2.5)
A 		9
B 2.4
(-1.8)
A 		2.3
(-2)
A 		6.1
(3)
A 		3.5
(-0.4)
A 		1.9
(-2.5)
A 		1.5
(-3)
A 		5
C 2.7
(2.6)
A 		2.2
(0.8)
A 		2.8
(3)
A 		2.8
(3)
A 		2.7
(2.6)
A 		1.2
(-3)
A 		2
avr 3.6
(-1) 		4.8
(3) 		3.3
(-2) 		3.1
(-2.7) 		3
(-3) 		4
(0.3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.2
(0.1)
A 		0.7
(-3)
A 		1.3
(-2.5)
A 		7.5
(3)
A 		7
B 0.8
(-2.5)
A 		3.4
(0.1)
A 		0.3
(-3)
A 		6.3
(3)
A 		6
C 1
(-2.4)
A 		5.2
(1.4)
A 		0.3
(-3)
A 		7
(3)
A 		7
avr 2
(-1.7) 		3.1
(-0.6) 		0.6
(-3) 		6.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1
(-1.6)
A 		3.6
(3)
A 		0.2
(-3)
A 		0.8
(-1.9)
A 		1.3
(-1.1)
A 		2.3
(0.7)
A 		3
B 0.8
(-1.7)
A 		0.8
(-1.7)
A 		1.5
(3)
A 		0.9
(-1)
A 		0.8
(-1.7)
A 		0.6
(-3)
A 		1
C 1
(3)
A 		0.7
(-0)
A 		0.7
(-0)
A 		0.6
(-1)
A 		0.9
(2)
A 		0.4
(-3)
A 		1
avr 0.9
(-2.3) 		1.7
(3) 		0.8
(-3) 		0.8
(-3) 		1
(-1.7) 		1.1
(-1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181639_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2057
Sequence Type Exemplar sequence
Representative Public ID T15D6.12 NCBI
Target Description T15D6.12 /REP_DB=WormBase Gene ID /WP=CE13702 /TR=O02319 /GB=CAB05625.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060742 NCBI Caenorhabditis elegans T15D6.12 (T15D6.12) mRNA, complete cds. 11/11 None
SNAP00000012749 ENSEMBL cdna:SNAP chromosome:CEL140:I:12407444:12409171:-1 11/11 None
T15D6.12 ENSEMBL cdna:known chromosome:CEL140:I:12407444:12409327:-1 gene:T15D6.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12407374-12409258(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15D6.12
Entrez Gene 173110 Entrez gene
SwissProt O02319 EMBL-EBI
WormBase CE13702 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05625 Hypothetical protein T15D6.12 [Caenorhabditis elegans] ref|NP_493143.1| T15D6.12 [Caenorhabditis elegans] 0.0
blast CAB04027 Hypothetical protein E03H4.5 [Caenorhabditis elegans] ref|NP_493148.1| E03H4.5 [Caenorhabditis elegans] 0.0
blast AAC17753 Hypothetical protein C18G1.6 [Caenorhabditis elegans] ref|NP_504276.1| C18G1.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493143.1 1 7-26
T15D6.12 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:181639_S_AT
ctactattgggtcagttgcggattttgatgaagttatggtacctcacaatggtacaatgt
tggaatatgcatcaaaggaaatgactggaacaaatgttggagcattattatttaagaatt
cctacgtttcattggaacccagtatttatgacaatgaatttactggagtctcaaagccag
tgtttctagatggtacagctgcgccaaagtacgttttcaatgcaactgtaattgacattg
ctcaaactcattgggttagaagtttcacggattctacaaaacatacaaaagtttccgatg
gtacactgttgcatcatcgttttgatgcaaaatggaaaagaggagaggaagtggaaaaga
tgttcacatacttccctaacaatacctcagagcatgttgcaagtatgcaaaagacttcat
tgacaatattcaatgggtcgccaccaatgttttctttcgatttaatcaatggattaaaca
attgtgttctgcgaattaaggaaacaccaaatacttgccaaagcaccggtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACTATTGGGTCAGTTGCGGATTT 682 221 791 Antisense
CCTACGTTTCATTGGAACCCAGTAT 154 269 911 Antisense
GGAGTCTCAAAGCCAGTGTTTCTAG 414 517 955 Antisense
GTTTCTAGATGGTACAGCTGCGCCA 443 449 972 Antisense
AGCTGCGCCAAAGTACGTTTTCAAT 414 81 987 Antisense
ACATACTTCCCTAACAATACCTCAG 405 105 1156 Antisense
AATACCTCAGAGCATGTTGCAAGTA 102 169 1171 Antisense
GACAATATTCAATGGGTCGCCACCA 124 365 1212 Antisense
AATGGGTCGCCACCAATGTTTTCTT 487 163 1222 Antisense
AATGTTTTCTTTCGATTTAATCAAT 41 165 1236 Antisense
AAATACTTGCCAAAGCACCGGTGGA 586 111 1299 Antisense
Sequence Source Affymetrix Proprietary Database