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[181638_at] 7TM chemoreceptor, srx family

Description F40H7.2 /REP_DB=WormBase Gene ID /WP=CE10200 /TR=O17096 /GB=AAF39802.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 28      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 33.5
(-3)
A 		59.2
(-0.3)
A 		43.5
(-2)
A 		90.8
(3)
P 		57
B 70.5
(3)
P 		50.2
(-1)
A 		49
(-1.2)
P 		39.8
(-3)
A 		31
C 46.1
(3)
P 		39.4
(1.4)
A 		21.6
(-3)
A 		42.3
(2.1)
P 		25
avr 50
(0.7) 		49.6
(0.6) 		38
(-3) 		57.6
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 31.7
(-1.3)
A 		29
(-1.7)
A 		62
(3)
P 		31.3
(-1.4)
A 		20.1
(-3)
A 		57.5
(2.4)
A 		42
B 58.8
(3)
P 		42.7
(0.4)
A 		29.2
(-1.7)
A 		35.6
(-0.7)
A 		44.9
(0.8)
A 		21.3
(-3)
A 		38
C 45.7
(0.9)
A 		54.5
(1.8)
M 		30.1
(-0.6)
A 		66.9
(3)
A 		5.2
(-3)
A 		37.1
(0.1)
M 		62
avr 45.4
(3) 		42.1
(2.1) 		40.4
(1.6) 		44.6
(2.8) 		23.4
(-3) 		38.6
(1.1) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.2
(-0.5)
A 		12.9
(1.7)
A 		11.4
(-3)
A 		13.3
(3)
P 		2
B 22.5
(3)
P 		12.4
(-1.3)
A 		11.4
(-1.8)
P 		8.5
(-3)
A 		14
C 15.2
(3)
P 		11.3
(0.1)
A 		7.5
(-2.7)
A 		7.1
(-3)
P 		8
avr 16.6
(3) 		12.2
(-0.8) 		10.1
(-2.6) 		9.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.8
(-3)
A 		10.3
(0.3)
A 		13.5
(2.6)
P 		7.9
(-1.5)
A 		6.1
(-2.8)
A 		14
(3)
A 		8
B 20.4
(3)
P 		14.2
(0.2)
A 		7.1
(-3)
A 		9.4
(-2)
A 		18.3
(2.1)
A 		7.9
(-2.6)
A 		13
C 17
(3)
A 		16.6
(2.8)
M 		7.7
(-0.6)
A 		13.5
(1.6)
A 		1.7
(-3)
A 		12.4
(1.2)
M 		15
avr 14.4
(3) 		13.7
(2.3) 		9.4
(-2.3) 		10.3
(-1.3) 		8.7
(-3) 		11.4
(-0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181638_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5319
Sequence Type Exemplar sequence
Representative Public ID F40H7.2 NCBI
Target Description F40H7.2 /REP_DB=WormBase Gene ID /WP=CE10200 /TR=O17096 /GB=AAF39802.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062221(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062221 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-108) (srx-108) mRNA, complete cds. 11/11 None
SNAP00000031707 ENSEMBL cdna:SNAP chromosome:CEL140:II:3706144:3707059:1 9/11 None
GENEFINDER00000031711 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3705614:3707059:1 11/11 None
F40H7.2 ENSEMBL cdna:known chromosome:CEL140:II:3705614:3707059:1 gene:F40H7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031708 1/11 Cross Hyb Matching Probes None
F40H7.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3705612-3707058(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-108
Ensembl F40H7.2
Entrez Gene 185579 Entrez gene
SwissProt O17096 EMBL-EBI
WormBase CE10200 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39802 Serpentine receptor, class x protein 108 [Caenorhabditis elegans] ref|NP_494622.1| Serpentine Receptor, class X family member (srx-108) [Caenorhabditis elegans] 1.0E-172
blast AAF39802 Serpentine receptor, class x protein 108 [Caenorhabditis elegans] ref|NP_494622.1| Serpentine Receptor, class X family member (srx-108) [Caenorhabditis elegans] 1.0E-170
blast AAB96691 Serpentine receptor, class x protein 110 [Caenorhabditis elegans] ref|NP_494624.1| Serpentine Receptor, class X family member (srx-110) [Caenorhabditis elegans] 1.0E-131
blast AAB96691 Serpentine receptor, class x protein 110 [Caenorhabditis elegans] ref|NP_494624.1| Serpentine Receptor, class X family member (srx-110) [Caenorhabditis elegans] 1.0E-129
blast AAF39802 Serpentine receptor, class x protein 108 [Caenorhabditis elegans] ref|NP_494622.1| Serpentine Receptor, class X family member (srx-108) [Caenorhabditis elegans] 1.0E-101
blast AAF39806 Serpentine receptor, class x protein 104 [Caenorhabditis elegans] ref|NP_494618.2| Serpentine Receptor, class X family member (srx-104) [Caenorhabditis elegans] 8.0E-81
blast AAF39806 Serpentine receptor, class x protein 104 [Caenorhabditis elegans] ref|NP_494618.2| Serpentine Receptor, class X family member (srx-104) [Caenorhabditis elegans] 3.0E-80
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494622.1 7 10-32,52-74,89-111,131-153,173-195,224-246,256-278
F40H7.2 7 10-32,52-74,89-111,131-153,173-195,224-246,256-278
SNAP00000031707 2 26-48,130-152
GENEFINDER00000031711 7 10-32,53-75,90-112,133-155,175-197,226-248,258-280
Sequence
Target Sequence 
>C. ELEGANS:181638_AT
ttcacagtttggttctcaactctagttggaatgccggctatctgccgtatcccattccta
ttcgatcatgtgccatatcccgactatcaggaaaatgattttaaatgcactgacactttg
atcacctgcctggtatctggcttgtttttattggcaatatctacaaatttcatgaacatt
ttgatagctgtcaagttgttttgtttgtcgaaatccaccagctccctttcctcggaaacc
gccaaaaatcgccgaaaaatgaagatccgctttttcctccaatcatgcttccaagattgg
atttgtatgctggatgtggcaatgaacttcacttccatcgaattctgtgggagccacgta
tgtgcagtgctcatcagtatgggatttgatgtactcgtctatgtgatggatggattgatc
atgtatttcttcaactatcgcttgaatttacccaaatcaagtcagtggaaaactgtatcg
gttggctctacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACAGTTTGGTTCTCAACTCTAG 616 685 412 Antisense
TGGAATGCCGGCTATCTGCCGTATC 250 547 438 Antisense
ATGTGCCATATCCCGACTATCAGGA 698 47 479 Antisense
ATGCACTGACACTTTGATCACCTGC 456 43 516 Antisense
ACCTGCCTGGTATCTGGCTTGTTTT 160 89 535 Antisense
GTTTTGTTTGTCGAAATCCACCAGC 319 447 609 Antisense
GAACTTCACTTCCATCGAATTCTGT 203 351 735 Antisense
GTGGGAGCCACGTATGTGCAGTGCT 293 487 758 Antisense
GATGTACTCGTCTATGTGATGGATG 363 409 799 Antisense
TCATGTATTTCTTCAACTATCGCTT 183 623 830 Antisense
GAAAACTGTATCGGTTGGCTCTACG 631 353 879 Antisense
Sequence Source Affymetrix Proprietary Database