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[181637_at]

Description ZK418.3 /REP_DB=WormBase Gene ID /WP=CE00729 /TR=Q23481 /GB=AAA50687.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 12      6grp_total > 33      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 46.6
(-1)
P 		17.8
(-3)
A 		29.8
(-2.1)
A 		102.2
(3)
P 		84
B 48.5
(-1.3)
P 		55.6
(0.3)
P 		41.4
(-3)
P 		67.2
(3)
P 		26
C 61.3
(2.5)
P 		42.3
(0.1)
P 		16.6
(-3)
A 		65.7
(3)
P 		49
avr 52.1
(-0.2) 		38.6
(-1.9) 		29.3
(-3) 		78.4
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 69.9
(3)
M 		36.2
(-0.7)
P 		47
(0.5)
P 		28
(-1.6)
A 		36
(-0.7)
A 		15.1
(-3)
A 		55
B 71.7
(0)
P 		41.7
(-2.1)
P 		113.2
(3)
P 		30.8
(-2.9)
P 		29.2
(-3)
A 		34.6
(-2.6)
A 		84
C 61.9
(1.8)
P 		75
(3)
P 		37.9
(-0.5)
A 		57.2
(1.3)
P 		10.9
(-3)
A 		29.3
(-1.3)
A 		64
avr 67.8
(3) 		51
(0.6) 		66
(2.7) 		38.7
(-1.1) 		25.4
(-3) 		26.3
(-2.9) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17
(3)
P 		3.9
(-3)
A 		7.8
(-1.2)
A 		15
(2.1)
P 		13
B 15.5
(3)
P 		13.7
(1.2)
P 		9.6
(-3)
P 		14.3
(1.8)
P 		6
C 20.3
(3)
P 		12.2
(-0.4)
P 		5.8
(-3)
A 		11.1
(-0.8)
P 		15
avr 17.6
(3) 		9.9
(-1.7) 		7.7
(-3) 		13.5
(0.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 12.9
(3)
M 		12.9
(3)
P 		10.2
(1.2)
P 		7.1
(-0.8)
A 		10.9
(1.7)
A 		3.7
(-3)
A 		9
B 25
(2.2)
P 		13.9
(-1.2)
P 		27.5
(3)
P 		8.2
(-3)
P 		11.9
(-1.8)
A 		12.9
(-1.5)
A 		19
C 22.9
(3)
P 		22.9
(3)
P 		9.7
(-1.1)
A 		11.5
(-0.5)
P 		3.5
(-3)
A 		9.8
(-1.1)
A 		19
avr 20.3
(3) 		16.6
(1.1) 		15.8
(0.7) 		8.9
(-2.9) 		8.8
(-3) 		8.8
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7332
Sequence Type Exemplar sequence
Representative Public ID ZK418.3 NCBI
Target Description ZK418.3 /REP_DB=WormBase Gene ID /WP=CE00729 /TR=Q23481 /GB=AAA50687.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066141(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066141 NCBI Caenorhabditis elegans ZK418.3 (ZK418.3) mRNA, complete cds. 11/11 None
SNAP00000003340 ENSEMBL cdna:SNAP chromosome:CEL140:III:7069224:7070811:1 11/11 None
ZK418.3 ENSEMBL cdna:known chromosome:CEL140:III:7069269:7070811:1 gene:ZK418.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003355 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7069266-7070809(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK418.3
Entrez Gene 191316 Entrez gene
SwissProt Q23481 EMBL-EBI
WormBase CE38989 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498542 ZK418.3 [Caenorhabditis elegans] 7.0E-82
blast NP_498542 ZK418.3 [Caenorhabditis elegans] 9.0E-82
blast AAA50687 Hypothetical protein ZK418.3 [Caenorhabditis elegans] 2.0E-62
blast AAA50687 Hypothetical protein ZK418.3 [Caenorhabditis elegans] 3.0E-62
blast CAE70073 Hypothetical protein CBG16514 [Caenorhabditis briggsae] 2.0E-46
blast CAE70073 Hypothetical protein CBG16514 [Caenorhabditis briggsae] 3.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498542.1 2 69-91,95-117
ZK418.3 2 69-91,95-117
SNAP00000003340 2 84-106,110-132
Sequence
Target Sequence 
>C. ELEGANS:181637_AT
aaacgtgtgtattccatgtaattcatgctctttacgtcagttacttaatggatgttgtcc
tagattacatagtctgctgtcattaacgtatcaagtaattgcattttctgcgtgtttagt
tcatttgggaagtgaaggagtacggctaggacttggattttatggaaatttggcagaaaa
tatgtcagctctttttggattcttaataactacaattattattcaaattcctcttacagt
attcttggcagtgaatggctcttttctgaatctcccacttgaatacgttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGTGTGTATTCCATGTAATTCA 198 127 33 Antisense
ATTCATGCTCTTTACGTCAGTTACT 698 11 53 Antisense
GTCCTAGATTACATAGTCTGCTGTC 1 477 89 Antisense
GTCTGCTGTCATTAACGTATCAAGT 188 471 104 Antisense
GCATTTTCTGCGTGTTTAGTTCATT 161 309 133 Antisense
GGAGTACGGCTAGGACTTGGATTTT 664 515 169 Antisense
ATATGTCAGCTCTTTTTGGATTCTT 125 21 212 Antisense
TATTATTCAAATTCCTCTTACAGTA 428 661 249 Antisense
CCTCTTACAGTATTCTTGGCAGTGA 296 267 262 Antisense
TGAATGGCTCTTTTCTGAATCTCCC 169 575 284 Antisense
GAATCTCCCACTTGAATACGTTTTC 312 327 300 Antisense
Sequence Source Affymetrix Proprietary Database