[Home] | [Total List]

[181635_at]

Description F55G11.2 /REP_DB=WormBase Gene ID /WP=CE18748 /TR=Q9XUD8 /GB=CAB05218.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 54      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3896
1 2 3 4 range
A 3594.4
(3)
P 		1133.5
(-1.1)
P 		873.5
(-1.6)
P 		12
(-3)
A 		3582
B 3769
(3)
P 		1057.9
(-1.3)
P 		899.5
(-1.6)
P 		29.5
(-3)
A 		3740
C 3908.4
(3)
P 		1150.9
(-1.3)
P 		905
(-1.7)
P 		54.6
(-3)
A 		3854
avr 3757.3
(3) 		1114.1
(-1.3) 		892.7
(-1.6) 		32
(-3) 		3725

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 156
(3)
P 		56.1
(-1.8)
A 		47.3
(-2.2)
A 		38.9
(-2.6)
A 		31.4
(-3)
A 		36.2
(-2.8)
A 		125
B 133.5
(3)
P 		65.1
(-0.2)
A 		17.2
(-2.4)
A 		48.4
(-1)
A 		9.7
(-2.8)
A 		5.3
(-3)
A 		128
C 98.2
(3)
P 		64.1
(0.8)
A 		27.1
(-1.6)
A 		75.5
(1.5)
A 		28.6
(-1.5)
A 		4.8
(-3)
A 		93
avr 129.2
(3) 		61.8
(-0.6) 		30.5
(-2.2) 		54.3
(-0.9) 		23.2
(-2.6) 		15.4
(-3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1307
1 2 3 4 range
A 1308.7
(3)
P 		246
(-1.9)
P 		228.4
(-2)
P 		1.7
(-3)
A 		1307
B 1201.9
(3)
P 		261.3
(-1.7)
P 		208.4
(-2)
P 		6.3
(-3)
A 		1196
C 1293.8
(3)
P 		330.9
(-1.5)
P 		315.4
(-1.6)
P 		9.2
(-3)
A 		1285
avr 1268.1
(3) 		279.4
(-1.7) 		250.7
(-1.8) 		5.7
(-3) 		1262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 28.7
(3)
P 		20
(0.4)
A 		10.3
(-2.5)
A 		9.9
(-2.7)
A 		9.5
(-2.8)
A 		8.8
(-3)
A 		20
B 46.4
(3)
P 		21.7
(-0.3)
A 		4.2
(-2.7)
A 		12.8
(-1.5)
A 		3.9
(-2.7)
A 		2
(-3)
A 		44
C 36.4
(3)
P 		19.6
(0.1)
A 		6.9
(-2.1)
A 		15.2
(-0.7)
A 		9.3
(-1.7)
A 		1.6
(-3)
A 		35
avr 37.2
(3) 		20.4
(-0) 		7.1
(-2.5) 		12.6
(-1.5) 		7.6
(-2.4) 		4.1
(-3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181635_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8393
Sequence Type Exemplar sequence
Representative Public ID F55G11.2 NCBI
Target Description F55G11.2 /REP_DB=WormBase Gene ID /WP=CE18748 /TR=Q9XUD8 /GB=CAB05218.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070082(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070082 NCBI Caenorhabditis elegans F55G11.2 (F55G11.2) mRNA, complete cds. 11/11 None
SNAP00000016144 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12967452:12969241:-1 11/11 None
GENEFINDER00000016154 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12967452:12971944:-1 11/11 None
F55G11.2 ENSEMBL cdna:known chromosome:CEL140:IV:12967452:12969241:-1 gene:F55G11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12967457-12969247(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G11.2
Entrez Gene 186337 Entrez gene
SwissProt Q9XUD8 EMBL-EBI
WormBase CE18748 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05218 Hypothetical protein F55G11.2 [Caenorhabditis elegans] ref|NP_502483.1| F55G11.2 [Caenorhabditis elegans] 0.0
blast CAB03527 Hypothetical protein F55G11.4 [Caenorhabditis elegans] emb|CAB05224.1| Hypothetical protein F55G11.4 [Caenorhabditis elegans] ref|NP_502485.1| F55G11.4 [Caenorhabditis elegans] 1.0E-141
blast T22745 hypothetical protein F55G11.3 - Caenorhabditis elegans 1.0E-137
blast CAB05221 Hypothetical protein F55G11.7 [Caenorhabditis elegans] ref|NP_502480.1| F55G11.7 [Caenorhabditis elegans] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.4E-50
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 5.7E-46
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.4E-50
Sequence
Target Sequence 
>C. ELEGANS:181635_AT
ccacttccatcatcacaatttgttggtcttgttggaactactggactggttgtcaacgcc
acagaaactgtttctgctatgggattctatattccaggtggacttactttgttatcattt
cccgaagatttgaaaaactatatttcactgagaagcacattgatttttgaagggaaaaat
atggactctgccaattatatcgcaagtctctaccagctataccagaaaaaagttcaatgg
agaactatccaacagaatattaatatagtcaacttggaagctagtcgttccaataataaa
gttcttcttcaaggatcccagtatttgactggaattgatgagatagttgaactccacccg
caacctaactcgatctataacggaactttgaacggagggacaaagatgtcttcacttgtt
gcagtgtctgatctcaaattgcaaatgattgatgctcagatggaagatgcctctaccgtt
acagtttactatggttctccagacgtgttcactctcgataaaacttacaccaaaggacag
ctggtaaaagcactcccactaacgttcaatggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACTTCCATCATCACAATTTGTTG 490 275 409 Antisense
CTGGACTGGTTGTCAACGCCACAGA 323 241 449 Antisense
AAACTGTTTCTGCTATGGGATTCTA 73 125 473 Antisense
GGGATTCTATATTCCAGGTGGACTT 661 495 489 Antisense
GACTTACTTTGTTATCATTTCCCGA 563 371 509 Antisense
ATATGGACTCTGCCAATTATATCGC 542 21 587 Antisense
TTATATCGCAAGTCTCTACCAGCTA 599 677 603 Antisense
TCTTCTTCAAGGATCCCAGTATTTG 406 615 711 Antisense
GTTGCAGTGTCTGATCTCAAATTGC 411 439 826 Antisense
GACAGCTGGTAAAAGCACTCCCACT 546 367 944 Antisense
GCACTCCCACTAACGTTCAATGGAC 626 313 958 Antisense
Sequence Source Affymetrix Proprietary Database