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[181634_at]

Description Y53H1A.3 /REP_DB=WormBase Gene ID /WP=CE25433 /TR=Q9NA92 /GB=CAB60592.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 10      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 4.2
(-2.8)
A 		9.2
(-1.9)
A 		3.1
(-3)
A 		37.5
(3)
A 		34
B 6
(-2.8)
A 		9.3
(-1.9)
A 		5.2
(-3)
A 		28.2
(3)
A 		23
C 4.2
(-3)
A 		7.8
(-2.6)
A 		4.1
(-3)
A 		65.1
(3)
A 		61
avr 4.8
(-2.9) 		8.8
(-2.3) 		4.1
(-3) 		43.6
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5
(-2.2)
A 		9.5
(3)
A 		6.2
(-0.8)
A 		5.4
(-1.7)
A 		8.9
(2.3)
A 		4.3
(-3)
A 		5
B 8.3
(-0.4)
A 		5.4
(-1.9)
A 		3.4
(-3)
A 		8.1
(-0.5)
A 		4.9
(-2.2)
A 		14.8
(3)
A 		11
C 5.8
(3)
A 		4.4
(0.5)
A 		3.6
(-0.9)
A 		2.7
(-2.5)
A 		3.9
(-0.4)
A 		2.4
(-3)
A 		3
avr 6.4
(1.3) 		6.4
(1.3) 		4.4
(-3) 		5.4
(-0.9) 		5.9
(0.2) 		7.2
(3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.5
(-2.1)
A 		2
(-1.5)
A 		0.8
(-3)
A 		5.5
(3)
A 		5
B 1.9
(-2.1)
A 		2.3
(-1.6)
A 		1.2
(-3)
A 		6
(3)
A 		5
C 1.4
(-3)
A 		2.2
(-2.5)
A 		1.4
(-3)
A 		11
(3)
A 		10
avr 1.6
(-2.5) 		2.2
(-2) 		1.1
(-3) 		7.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.9
(-3)
A 		3.4
(3)
A 		1.4
(-1.8)
A 		1.4
(-1.8)
A 		2.7
(1.3)
A 		1
(-2.8)
A 		3
B 2.9
(-0.3)
A 		1.8
(-1.7)
A 		0.8
(-3)
A 		2.2
(-1.2)
A 		2
(-1.5)
A 		5.5
(3)
A 		5
C 2.2
(3)
A 		1.3
(-0.2)
A 		0.9
(-1.6)
A 		0.5
(-3)
A 		1.3
(-0.2)
A 		0.8
(-1.9)
A 		2
avr 2
(1.3) 		2.2
(2.1) 		1
(-3) 		1.4
(-1.3) 		2
(1.3) 		2.4
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181634_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2150
Sequence Type Exemplar sequence
Representative Public ID Y53H1A.3 NCBI
Target Description Y53H1A.3 /REP_DB=WormBase Gene ID /WP=CE25433 /TR=Q9NA92 /GB=CAB60592.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060479(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060479 NCBI Caenorhabditis elegans Y53H1A.3 (Y53H1A.3) mRNA, complete cds. 11/11 None
SNAP00000030283 ENSEMBL cdna:SNAP chromosome:CEL140:I:11242426:11243776:-1 9/11 None
GENEFINDER00000030284 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11242426:11243260:-1 10/11 None
Y53H1A.3 ENSEMBL cdna:known chromosome:CEL140:I:11242426:11243300:-1 gene:Y53H1A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11242356-11243231(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53H1A.3
Entrez Gene 190246 Entrez gene
SwissProt Q9NA92 EMBL-EBI
WormBase CE25433 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60592 Hypothetical protein Y53H1A.3 [Caenorhabditis elegans] ref|NP_492880.1| Y53H1A.3 [Caenorhabditis elegans] 1.0E-111
blast CAB60592 Hypothetical protein Y53H1A.3 [Caenorhabditis elegans] ref|NP_492880.1| Y53H1A.3 [Caenorhabditis elegans] 1.0E-105
blast CAB60592 Hypothetical protein Y53H1A.3 [Caenorhabditis elegans] ref|NP_492880.1| Y53H1A.3 [Caenorhabditis elegans] 1.0E-82
blast CAE63482 Hypothetical protein CBG07950 [Caenorhabditis briggsae] 8.0E-49
blast CAE63482 Hypothetical protein CBG07950 [Caenorhabditis briggsae] 2.0E-48
blast CAE63482 Hypothetical protein CBG07950 [Caenorhabditis briggsae] 1.0E-38
blast CAB54344 Hypothetical protein Y26D4A.6 [Caenorhabditis elegans] ref|NP_493289.1| Y26D4A.6 [Caenorhabditis elegans] 3.0E-35
blast CAB54344 Hypothetical protein Y26D4A.6 [Caenorhabditis elegans] ref|NP_493289.1| Y26D4A.6 [Caenorhabditis elegans] 4.0E-35
Sequence
Target Sequence 
>C. ELEGANS:181634_AT
ttctcgttttcataaccacttcagctatagattttgatgattcctcatgtgactcctcgt
cagaagagcatggaggtgggcgtccggctcgaccgggcacctgtggacagcactggcata
ctttcaagagaccacaggggacatggtgtgttagagtggtcaccggcgatgtagactact
accggggtcttgctgaatgcgcaaagtacggagcagtcctgtccggaattcaaaacaatc
aagaacgagaatggattgcaaacaaggccgttagcttgaacgtagccgctggtaaaactc
actcaggagtctggcttggtgctcagcgaacctctgcgacggcgttccgatggacagacg
ggcataccactgggactgaagctatggtattcgggcctggacaaccggataatgatcatg
gagctggaagaggacctcaacgctgcctgcagcttatggccttgacaccgtcctactgga
acattccgggtcacctgataaatctgaagagtggacagcttgacgatatttggtgtaatg
tgactttgagcccgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCGTTTTCATAACCACTTCAGC 178 689 29 Antisense
GACAGCACTGGCATACTTTCAAGAG 335 369 134 Antisense
GTGGTCACCGGCGATGTAGACTACT 517 487 184 Antisense
CTACTACCGGGGTCTTGCTGAATGC 555 223 204 Antisense
AGTACGGAGCAGTCCTGTCCGGAAT 558 57 233 Antisense
CGTAGCCGCTGGTAAAACTCACTCA 264 247 309 Antisense
CACTCAGGAGTCTGGCTTGGTGCTC 94 197 328 Antisense
GCTATGGTATTCGGGCCTGGACAAC 366 301 409 Antisense
CTGCCTGCAGCTTATGGCCTTGACA 456 235 471 Antisense
TGACACCGTCCTACTGGAACATTCC 664 571 491 Antisense
GGTGTAATGTGACTTTGAGCCCGCG 113 501 560 Antisense
Sequence Source Affymetrix Proprietary Database