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[181633_at] 7TM chemoreceptor, srx family

Description K07C6.8 /REP_DB=WormBase Gene ID /WP=CE17179 /TR=O44643 /GB=AAB94250.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 10      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 48.9
(-2.1)
A 		40
(-3)
A 		50.1
(-2)
A 		100.9
(3)
A 		61
B 43.1
(-0.1)
A 		42.1
(-0.5)
A 		35.4
(-3)
A 		51.2
(3)
A 		16
C 13.8
(-2.5)
A 		28
(-1.8)
A 		4.8
(-3)
A 		124.5
(3)
A 		120
avr 35.3
(-2.5) 		36.7
(-2.4) 		30.1
(-3) 		92.2
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 9.1
(-3)
A 		19.3
(-1.6)
A 		31.8
(0.2)
A 		39.2
(1.2)
A 		51.8
(3)
A 		27.5
(-0.4)
A 		43
B 40
(2.3)
A 		10.5
(-2.5)
A 		7.4
(-3)
A 		44.6
(3)
A 		35.2
(1.5)
A 		40.2
(2.3)
A 		37
C 5.7
(-2.7)
A 		52.9
(1.8)
A 		34.6
(0)
A 		65.3
(3)
A 		30.5
(-0.3)
A 		2.9
(-3)
A 		62
avr 18.3
(-3) 		27.6
(-1.2) 		24.6
(-1.8) 		49.7
(3) 		39.2
(1) 		23.5
(-2) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 17.8
(3)
A 		8.7
(-3)
A 		13.1
(-0.1)
A 		14.8
(1)
A 		9
B 13.7
(3)
A 		10.4
(-0.6)
A 		8.2
(-3)
A 		10.9
(-0.1)
A 		6
C 4.6
(-2.1)
A 		8
(-1)
A 		1.7
(-3)
A 		21
(3)
A 		19
avr 12
(0.3) 		9
(-2) 		7.7
(-3) 		15.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.7
(-3)
A 		6.9
(-0.8)
A 		6.9
(-0.8)
A 		9.9
(0.5)
A 		15.6
(3)
A 		6.7
(-0.8)
A 		14
B 13.9
(2.5)
A 		3.5
(-2.2)
A 		1.8
(-3)
A 		11.8
(1.5)
A 		14.3
(2.7)
A 		15
(3)
A 		13
C 2.1
(-2.6)
A 		16.1
(3)
A 		8.8
(0.1)
A 		13.1
(1.8)
A 		9.9
(0.5)
A 		1
(-3)
A 		15
avr 5.9
(-2.9) 		8.8
(-0.6) 		5.8
(-3) 		11.6
(1.6) 		13.3
(3) 		7.6
(-1.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181633_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15424
Sequence Type Exemplar sequence
Representative Public ID K07C6.8 NCBI
Target Description K07C6.8 /REP_DB=WormBase Gene ID /WP=CE17179 /TR=O44643 /GB=AAB94250.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071685 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-65) (srx-65) mRNA, complete cds. 11/11 None
SNAP00000025762 ENSEMBL cdna:SNAP chromosome:CEL140:V:3922071:3922777:1 11/11 None
GENEFINDER00000025776 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3921748:3922777:1 11/11 None
K07C6.8 ENSEMBL cdna:known chromosome:CEL140:V:3921748:3922777:1 gene:K07C6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3921642-3922867(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-65
Ensembl K07C6.8
Entrez Gene 187096 Entrez gene
SwissProt O44643 EMBL-EBI
WormBase CE36551 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94250 Serpentine receptor, class x protein 65 [Caenorhabditis elegans] ref|NP_504086.2| Serpentine Receptor, class X family member (srx-65) [Caenorhabditis elegans] 1.0E-169
blast AAB94250 Serpentine receptor, class x protein 65 [Caenorhabditis elegans] ref|NP_504086.2| Serpentine Receptor, class X family member (srx-65) [Caenorhabditis elegans] 1.0E-115
blast AAB94251 Serpentine receptor, class x protein 66 [Caenorhabditis elegans] ref|NP_504085.2| Serpentine Receptor, class X family member (srx-66) [Caenorhabditis elegans] 1.0E-114
blast AAB94243 Serpentine receptor, class x protein 63 [Caenorhabditis elegans] ref|NP_504090.2| Serpentine Receptor, class X family member (srx-63) [Caenorhabditis elegans] 2.0E-95
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504086.2 6 7-29,49-71,78-97,124-146,226-243,248-270
K07C6.8 6 7-29,49-71,78-97,124-146,226-243,248-270
SNAP00000025762 4 31-53,84-101,135-152,157-179
GENEFINDER00000025776 6 7-29,49-71,78-97,124-146,226-243,248-270
Sequence
Target Sequence 
>C. ELEGANS:181633_AT
ggtgattggggtactctggtgttatacattgatccaggcaactgtactctatgaagtgct
ctgctatttctacttcgacgaagaaatccggttcctgacattcaccaaaacccctttctg
cgctatcattggtacctacggagattttctgaaaaacaccgtgattgtcacattcatgat
gtccgttgacatcttgaatttgatcaaagtcaaagtgaagtcatatcaaataaagaacac
gctgaccaatgcagccattgagaagctctcctgtcgggatcgccgatttttgagacaaac
tataatacagggttctgtatatatgctcggcatgataacatactttttcactccaatata
ttttgaaaaccgttggatcctgttcttcggcacctcgttctcctgggtagctgtccatgt
ggcagatgggctaatactgctcatttgcaatccggaaatacgccattacatattccacgt
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGATTGGGGTACTCTGGTGTTAT 677 499 483 Antisense
GAAGTGCTCTGCTATTTCTACTTCG 596 335 535 Antisense
CGAAGAAATCCGGTTCCTGACATTC 52 253 561 Antisense
CTTTCTGCGCTATCATTGGTACCTA 179 223 596 Antisense
GAACACGCTGACCAATGCAGCCATT 65 353 717 Antisense
GCAGCCATTGAGAAGCTCTCCTGTC 279 313 733 Antisense
CTCCTGTCGGGATCGCCGATTTTTG 372 227 750 Antisense
GAAAACCGTTGGATCCTGTTCTTCG 233 351 847 Antisense
TTCTCCTGGGTAGCTGTCCATGTGG 622 693 880 Antisense
AATACTGCTCATTTGCAATCCGGAA 583 171 915 Antisense
AATACGCCATTACATATTCCACGTT 550 171 939 Antisense
Sequence Source Affymetrix Proprietary Database