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[181630_at]

Description Y37D8A.5 /REP_DB=WormBase Gene ID /WP=CE20210 /TR=Q9XWW4 /GB=CAA21525.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 20      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 62
(0.9)
A 		45.4
(-0.8)
A 		24.9
(-3)
A 		81.6
(3)
A 		57
B 53
(1.8)
A 		62.9
(3)
A 		13.8
(-3)
A 		35.8
(-0.3)
A 		49
C 54.4
(-1.5)
A 		38.3
(-2.5)
A 		31
(-3)
A 		122
(3)
A 		91
avr 56.5
(0.5) 		48.9
(-0.3) 		23.2
(-3) 		79.8
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 39.6
(-3)
A 		44.2
(-2.8)
A 		39.5
(-3)
A 		61.1
(-2.1)
A 		138.6
(0.9)
P 		191.8
(3)
P 		152
B 59.7
(-0.9)
A 		36.9
(-1.8)
A 		5.5
(-3)
A 		47.2
(-1.4)
A 		145.4
(2.4)
M 		160.8
(3)
P 		155
C 32.1
(-2.5)
A 		33.3
(-2.5)
A 		23.6
(-3)
A 		93.1
(0.8)
A 		113.7
(1.9)
P 		133.8
(3)
P 		110
avr 43.8
(-2.1) 		38.1
(-2.3) 		22.9
(-3) 		67.1
(-1.1) 		132.6
(1.7) 		162.1
(3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 22.6
(3)
A 		9.9
(-1.7)
A 		6.5
(-3)
A 		11.9
(-1)
A 		16
B 16.9
(3)
A 		15.5
(2.4)
A 		3.2
(-3)
A 		7.6
(-1.1)
A 		14
C 18
(1.4)
A 		11
(-2.9)
A 		10.8
(-3)
A 		20.6
(3)
A 		10
avr 19.2
(3) 		12.1
(-0.4) 		6.8
(-3) 		13.4
(0.2) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 7.3
(-3)
A 		15.7
(-1.7)
A 		8.6
(-2.8)
A 		15.5
(-1.8)
A 		41.8
(2.3)
P 		46.7
(3)
P 		39
B 20.8
(-1)
A 		12.3
(-1.9)
A 		1.3
(-3)
A 		12.5
(-1.9)
A 		59.1
(2.9)
M 		59.9
(3)
P 		59
C 11.9
(-2.1)
A 		10.2
(-2.4)
A 		6
(-3)
A 		18.7
(-1)
A 		36.8
(1.8)
P 		44.8
(3)
P 		39
avr 13.3
(-1.9) 		12.7
(-2) 		5.3
(-3) 		15.6
(-1.6) 		45.9
(2.4) 		50.5
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181630_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7994
Sequence Type Exemplar sequence
Representative Public ID Y37D8A.5 NCBI
Target Description Y37D8A.5 /REP_DB=WormBase Gene ID /WP=CE20210 /TR=Q9XWW4 /GB=CAA21525.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067270(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067270 NCBI Caenorhabditis elegans Y37D8A.5 (Y37D8A.5) mRNA, complete cds. 11/11 None
SNAP00000028772 ENSEMBL cdna:SNAP chromosome:CEL140:III:12853968:12855188:-1 11/11 None
GENEFINDER00000028808 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12853968:12855471:-1 11/11 None
Y37D8A.5 ENSEMBL cdna:known chromosome:CEL140:III:12853968:12855471:-1 gene:Y37D8A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12853963-12855467(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37D8A.5
Entrez Gene 189613 Entrez gene
SwissProt Q9XWW4 EMBL-EBI
WormBase CE20210 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21525 Hypothetical protein Y37D8A.5 [Caenorhabditis elegans] ref|NP_499671.1| Y37D8A.5 [Caenorhabditis elegans] 1.0E-129
blast CAA21525 Hypothetical protein Y37D8A.5 [Caenorhabditis elegans] ref|NP_499671.1| Y37D8A.5 [Caenorhabditis elegans] 1.0E-106
blast NP_491044 W03D8.9 [Caenorhabditis elegans] gb|AAK21499.1| Hypothetical protein W03D8.9 [Caenorhabditis elegans] 1.0E-101
blast CAE64563 Hypothetical protein CBG09313 [Caenorhabditis briggsae] 4.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR008574 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF856 1.0E-126
Pfam IPR008574 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF856 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499671.1 7 167-189,194-216,229-251,256-273,280-299,304-326,339-361
Y37D8A.5 7 167-189,194-216,229-251,256-273,280-299,304-326,339-361
SNAP00000028772 7 120-142,149-171,181-203,210-232,236-253,258-280,295-317
GENEFINDER00000028808 7 167-189,194-216,229-251,256-273,280-299,304-326,339-361
Sequence
Target Sequence 
>C. ELEGANS:181630_AT
aacttcctcagtcgttgaaatcttcggatggtcttcgatccttcttcttggcgccggcat
cgccagcatcattggtggctacgtgctctcgccaatctttggaattttcatcggaagagg
tggtgcggcaattttcgcatcgcttgtactccctggagccggtgcatattacttgaatgc
cgaggatggctcaacgtctgcgacaagatttcagctgttggttttggcattggctcaagg
aatcctgatgggacactcgatctcgtacacctacttgagcggacagcctctcggattcat
tactccaatggttattgcattcgcatatccgttgattgctggacaagttggtacagctcg
tgctccattgttgggtggtgcaatcggtgcggctctcggggttcagcttttgcttggaat
cgtctctggaagtctctctttctcctatttcattttgagtgccctctacagcgttgcttc
cggtgcacttcttcaaattgccaacaagaatatgacgccaccaagcagacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTCCTCAGTCGTTGAAATCTTC 450 139 489 Antisense
AGCATCATTGGTGGCTACGTGCTCT 34 79 553 Antisense
GTGGTGCGGCAATTTTCGCATCGCT 485 489 608 Antisense
GATGGCTCAACGTCTGCGACAAGAT 269 407 673 Antisense
GATCTCGTACACCTACTTGAGCGGA 157 417 747 Antisense
AGCCTCTCGGATTCATTACTCCAAT 517 83 773 Antisense
TTCGCATATCCGTTGATTGCTGGAC 463 697 808 Antisense
TGTTGGGTGGTGCAATCGGTGCGGC 611 559 857 Antisense
TCAGCTTTTGCTTGGAATCGTCTCT 604 623 891 Antisense
TCATTTTGAGTGCCCTCTACAGCGT 542 619 938 Antisense
GAATATGACGCCACCAAGCAGACAC 80 327 996 Antisense
Sequence Source Affymetrix Proprietary Database