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[181629_at]

Description C31B8.4 /REP_DB=WormBase Gene ID /WP=CE08484 /TR=O16898 /GB=AAG23975.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 93      6grp_highest_nonorm > 92      6grp_total > 84      4grp_total > 02      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1653
1 2 3 4 range
A 65
(-2.8)
A 		38.1
(-2.9)
A 		10.7
(-3)
A 		1558.9
(3)
P 		1548
B 24.4
(-3)
A 		43.2
(-2.9)
A 		55.9
(-2.9)
A 		1663.9
(3)
P 		1640
C 82
(-2.8)
A 		62.1
(-2.9)
A 		44.5
(-3)
M 		1432.4
(3)
P 		1388
avr 57.1
(-2.9) 		47.8
(-3) 		37
(-3) 		1551.7
(3) 		1515

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 378
1 2 3 4 5 6 range
A 154.6
(-3)
P 		184.3
(-2.4)
P 		278.9
(-0.6)
P 		465.6
(3)
P 		392.9
(1.6)
P 		338.8
(0.6)
P 		311
B 178
(-2.7)
P 		160.8
(-3)
P 		254.2
(-1.4)
P 		494.5
(2.9)
P 		502.8
(3)
P 		408
(1.3)
P 		342
C 142.1
(-3)
P 		188.2
(-2.3)
P 		258.3
(-1.2)
P 		415.6
(1.3)
P 		520.4
(3)
P 		408.1
(1.2)
P 		378
avr 158.2
(-3) 		177.8
(-2.6) 		263.8
(-1) 		458.6
(2.7) 		472
(3) 		385
(1.3) 		314
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 23.7
(-2.4)
A 		8.3
(-2.9)
A 		2.8
(-3)
A 		228.2
(3)
P 		225
B 7.8
(-3)
A 		10.7
(-2.9)
A 		13
(-2.9)
A 		354.6
(3)
P 		347
C 27.2
(-2.7)
A 		17.9
(-2.9)
A 		15.5
(-3)
M 		241.5
(3)
P 		226
avr 19.6
(-2.8) 		12.3
(-3) 		10.4
(-3) 		274.8
(3) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 28.5
(-3)
P 		65.6
(-0.5)
P 		60.7
(-0.9)
P 		118.1
(3)
P 		118.6
(3)
P 		82.5
(0.6)
P 		90
B 61.9
(-2.7)
P 		53.5
(-3)
P 		61.7
(-2.7)
P 		131
(0.1)
P 		204.3
(3)
P 		152.1
(0.9)
P 		151
C 52.7
(-3)
P 		57.4
(-2.8)
P 		65.7
(-2.3)
P 		83.6
(-1.4)
P 		168.4
(3)
P 		136.6
(1.4)
P 		116
avr 47.7
(-3) 		58.8
(-2.4) 		62.7
(-2.2) 		110.9
(0.3) 		163.8
(3) 		123.7
(0.9) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181629_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15496
Sequence Type Exemplar sequence
Representative Public ID C31B8.4 NCBI
Target Description C31B8.4 /REP_DB=WormBase Gene ID /WP=CE08484 /TR=O16898 /GB=AAG23975.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071386 NCBI Caenorhabditis elegans C31B8.4 (C31B8.4) mRNA, complete cds. 11/11 None
SNAP00000035066 ENSEMBL cdna:SNAP chromosome:CEL140:V:2896464:2898244:1 11/11 None
GENEFINDER00000035078 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2893939:2898244:1 11/11 None
C31B8.4 ENSEMBL cdna:known chromosome:CEL140:V:2896464:2898244:1 gene:C31B8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2896463-2898244(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31B8.4
Entrez Gene 183078 Entrez gene
SwissProt O16898 EMBL-EBI
WormBase CE08484 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503787 C31B8.4 [Caenorhabditis elegans] gb|AAG23975.1| Hypothetical protein C31B8.4 [Caenorhabditis elegans] 0.0
blast T32162 hypothetical protein C31B8.5 - Caenorhabditis elegans 8.0E-57
blast AAK18952 Serpentine receptor, class h protein 127 [Caenorhabditis elegans] ref|NP_503786.1| Serpentine Receptor, class H family member (srh-127) [Caenorhabditis elegans] 7.0E-51
blast CAA99807 Hypothetical protein C54D10.7 [Caenorhabditis elegans] ref|NP_506120.1| C54D10.7 [Caenorhabditis elegans] 1.0E-33
blast CAB07169 Hypothetical protein C17H1.5 [Caenorhabditis elegans] ref|NP_493297.1| C17H1.5 [Caenorhabditis elegans] 8.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.6E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000035078 2 36-58,81-103
Sequence
Target Sequence 
>C. ELEGANS:181629_AT
gcggctccaattgctcgaagagcacaaacaagaaatcgatcacatcgaccgtctgacagc
cgtaatccaatgtcaaagagctaatgcagctacaaaagcccttctgaataaatttctaat
tctcatgaagcctgtccacgaaactgtgaaattgttgaaagaaatcgaaccatactgcgc
tactggttccgaagaaagcgatttcagcgttgcaagtaatttaaacgaaatcgccatttc
aagatctacatttttaacgcaagtgaatcaattcaaccaatacattattgctgacaataa
tattgaccaactcgtagtcaattgctgcgtgaactacataaaaaccctgaaacaaactat
ggactctagagaaattcgttttcttggtgtacatttgccaaaagcgattgcaaaacaaga
tgaggctgcaattgaaaagtacgcccggtcaattgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGCTCCAATTGCTCGAAGAGCAC 146 295 588 Antisense
AATCGATCACATCGACCGTCTGACA 112 169 621 Antisense
CCGTCTGACAGCCGTAATCCAATGT 637 263 636 Antisense
ATGCAGCTACAAAAGCCCTTCTGAA 710 43 671 Antisense
AATTCTCATGAAGCCTGTCCACGAA 706 175 705 Antisense
GAAATCGAACCATACTGCGCTACTG 75 361 748 Antisense
GAAAGCGATTTCAGCGTTGCAAGTA 630 359 781 Antisense
AAATCGCCATTTCAAGATCTACATT 276 119 815 Antisense
GACCAACTCGTAGTCAATTGCTGCG 18 385 892 Antisense
GAAATTCGTTTTCTTGGTGTACATT 387 355 958 Antisense
TGAAAAGTACGCCCGGTCAATTGAA 685 363 1020 Antisense
Sequence Source Affymetrix Proprietary Database