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[181628_at]

Description F39G3.4 /REP_DB=WormBase Gene ID /WP=CE10118 /TR=O16272 /GB=AAB65326.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 42      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 43.7
(-0.4)
A 		57.4
(1.7)
A 		65.6
(3)
A 		26.4
(-3)
A 		39
B 32.9
(1.2)
A 		39
(3)
A 		26.5
(-0.6)
A 		18.1
(-3)
A 		21
C 39.8
(-3)
A 		66.4
(1.3)
A 		44.3
(-2.3)
A 		76.5
(3)
A 		37
avr 38.8
(-3) 		54.3
(3) 		45.5
(-0.4) 		40.3
(-2.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 39.8
(-2.6)
A 		26.3
(-3)
A 		42.8
(-2.6)
A 		245.3
(2.8)
P 		251.2
(3)
P 		118
(-0.6)
P 		225
B 39.8
(-2.9)
A 		41.8
(-2.9)
A 		36.4
(-3)
A 		262.9
(3)
P 		190.6
(1.1)
P 		132.7
(-0.4)
P 		227
C 80.6
(-2)
A 		40
(-3)
A 		49.2
(-2.8)
A 		222.9
(1.6)
P 		279.5
(3)
P 		106.3
(-1.3)
P 		240
avr 53.4
(-2.5) 		36
(-3) 		42.8
(-2.8) 		243.7
(3) 		240.4
(2.9) 		119
(-0.6) 		208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.9
(2.5)
A 		12.5
(0.9)
A 		17.1
(3)
A 		3.9
(-3)
A 		13
B 10.5
(3)
A 		9.6
(2.2)
A 		6.2
(-0.9)
A 		3.9
(-3)
A 		7
C 13.2
(-2.7)
A 		19.1
(3)
A 		15.4
(-0.6)
A 		12.9
(-3)
A 		6
avr 13.2
(2.6) 		13.7
(3) 		12.9
(2.3) 		6.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 7.3
(-3)
A 		9.4
(-2.8)
A 		9.3
(-2.8)
A 		62.2
(1.8)
P 		75.8
(3)
P 		28.7
(-1.1)
P 		69
B 13.8
(-2.6)
A 		13.9
(-2.6)
A 		8.8
(-3)
A 		69.6
(2.3)
P 		77.4
(3)
P 		49.5
(0.6)
P 		69
C 29.9
(-1.6)
A 		12.2
(-3)
A 		12.5
(-3)
A 		44.8
(-0.5)
P 		90.5
(3)
P 		35.6
(-1.2)
P 		78
avr 17
(-2.4) 		11.8
(-2.9) 		10.2
(-3) 		58.9
(1.1) 		81.2
(3) 		37.9
(-0.7) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181628_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15594
Sequence Type Exemplar sequence
Representative Public ID F39G3.4 NCBI
Target Description F39G3.4 /REP_DB=WormBase Gene ID /WP=CE10118 /TR=O16272 /GB=AAB65326.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071869(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071869 NCBI Caenorhabditis elegans F39G3.4 (F39G3.4) mRNA, complete cds. 11/11 None
SNAP00000029880 ENSEMBL cdna:SNAP chromosome:CEL140:V:4724591:4734244:1 11/11 None
GENEFINDER00000029886 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4724591:4726540:1 11/11 None
F39G3.4 ENSEMBL cdna:known chromosome:CEL140:V:4724477:4726540:1 gene:F39G3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4724476-4726540(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F39G3.4
Entrez Gene 185502 Entrez gene
SwissProt O16272 EMBL-EBI
WormBase CE10118 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65329 Hypothetical protein F39G3.3 [Caenorhabditis elegans] ref|NP_504272.2| F39G3.3 [Caenorhabditis elegans] 0.0
blast AAB65326 Hypothetical protein F39G3.4 [Caenorhabditis elegans] ref|NP_504270.1| F39G3.4 [Caenorhabditis elegans] 1.0E-155
blast AAB65326 Hypothetical protein F39G3.4 [Caenorhabditis elegans] ref|NP_504270.1| F39G3.4 [Caenorhabditis elegans] 1.0E-140
blast AAB65326 Hypothetical protein F39G3.4 [Caenorhabditis elegans] ref|NP_504270.1| F39G3.4 [Caenorhabditis elegans] 1.0E-127
blast CAE64180 Hypothetical protein CBG08806 [Caenorhabditis briggsae] 7.0E-89
blast CAE64178 Hypothetical protein CBG08803 [Caenorhabditis briggsae] 3.0E-75
blast CAE64178 Hypothetical protein CBG08803 [Caenorhabditis briggsae] 4.0E-75
blast AAB65330 Hypothetical protein F39G3.5a [Caenorhabditis elegans] ref|NP_001023900.1| F39G3.5a [Caenorhabditis elegans] 2.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR004877 EMBL-EBI Cytochrome b561 3.7E-111
Pfam IPR004877 EMBL-EBI Cytochrome b561 2.7E-100
Pfam IPR004877 EMBL-EBI Cytochrome b561 3.7E-111
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504270.1 7 22-44,56-78,98-120,133-155,165-187,208-230,245-267
F39G3.4 7 22-44,56-78,98-120,133-155,165-187,208-230,245-267
SNAP00000029880 5 7-29,60-82,95-117,127-149,170-192
GENEFINDER00000029886 6 7-29,60-82,95-117,127-149,170-192,207-229
Sequence
Target Sequence 
>C. ELEGANS:181628_AT
gttggctccacggatgccagaggacttgttgaaatgagagggaaacagcttcatggattc
ttaatgtttctgggatttatttatctacagggagaagctcttctctcgtaccgtgtctat
cgatttactacaaaccgagtttcaatattaattcacacttttctccacatcgcatccatt
gtcctagccgttggagctctcttttccatcattctcacaataaaatacaccggagcaagt
catttttccaatattcatagttatcttggagtatgcctattgctggtttattcgggtcag
ctgtcatttggtttttgcacgtatctattcaaatgcacaccgaaagattaccaatcccgg
ctcatgccagtgcaccgagcagttggaataagttgtatggttgtggcttgtgttcagtgt
tgccttggatataatcagatggtttcaggaaaactatcttgcttcaaagatctttcttgc
gcaaatcgaatcgagtacgtcgggtcgctttccatgatcttcaacatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGCTCCACGGATGCCAGAGGAC 656 435 256 Antisense
AGGGAGAAGCTCTTCTCTCGTACCG 240 59 344 Antisense
TATTAATTCACACTTTTCTCCACAT 511 663 401 Antisense
ATCCATTGTCCTAGCCGTTGGAGCT 307 39 429 Antisense
GTATGCCTATTGCTGGTTTATTCGG 140 455 526 Antisense
ATTCGGGTCAGCTGTCATTTGGTTT 277 9 545 Antisense
CCGAAAGATTACCAATCCCGGCTCA 594 261 595 Antisense
CATGCCAGTGCACCGAGCAGTTGGA 414 211 618 Antisense
GGTTGTGGCTTGTGTTCAGTGTTGC 519 507 654 Antisense
CGAATCGAGTACGTCGGGTCGCTTT 461 203 742 Antisense
TCGCTTTCCATGATCTTCAACATTA 256 601 760 Antisense
Sequence Source Affymetrix Proprietary Database