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[181626_at]

Description ZK546.7 /REP_DB=WormBase Gene ID /WP=CE02921 /TR=Q23518 /GB=AAA68740.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.3
(-3)
A 		11.7
(3)
A 		5.2
(-0.8)
A 		7
(0.3)
A 		10
B 1.3
(-3)
A 		2.3
(-1.1)
A 		4.5
(3)
A 		4.3
(2.6)
A 		3
C 10.2
(3)
A 		5.6
(-0.2)
A 		1.6
(-3)
A 		7.5
(1.1)
A 		9
avr 4.3
(-1.9) 		6.5
(3) 		3.8
(-3) 		6.3
(2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.1
(-2.1)
A 		2.8
(-0.8)
A 		2
(-2.3)
A 		1.6
(-3)
A 		4.9
(3)
A 		1.6
(-3)
A 		3
B 1.4
(-2.3)
A 		1.3
(-2.5)
A 		2.8
(1.1)
A 		2.9
(1.3)
A 		1.1
(-3)
A 		3.6
(3)
A 		3
C 1.9
(-2.7)
A 		1.5
(-3)
A 		8.9
(3)
A 		4.9
(-0.2)
A 		1.5
(-3)
A 		2.8
(-1.9)
A 		7
avr 1.8
(-3) 		1.9
(-2.8) 		4.6
(3) 		3.1
(-0.2) 		2.5
(-1.5) 		2.7
(-1.1) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.5
(-3)
A 		2.5
(3)
A 		1.4
(-0.3)
A 		1
(-1.5)
A 		2
B 0.4
(-3)
A 		0.6
(-1)
A 		1
(3)
A 		0.9
(2)
A 		1
C 3.4
(3)
A 		1.6
(-0.9)
A 		0.6
(-3)
A 		1.3
(-1.5)
A 		3
avr 1.4
(1) 		1.6
(3) 		1
(-3) 		1.1
(-2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1
(0.3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1.5
(3)
A 		0.4
(-3)
A 		1
B 0.5
(-2.3)
A 		0.4
(-3)
A 		0.7
(-1)
A 		0.8
(-0.3)
A 		0.5
(-2.3)
A 		1.3
(3)
A 		1
C 0.7
(-2.3)
A 		0.5
(-3)
A 		2.3
(3)
A 		1
(-1.3)
A 		0.5
(-3)
A 		0.9
(-1.7)
A 		2
avr 0.5
(-3) 		0.6
(-2) 		1.1
(3) 		0.7
(-1) 		0.8
(0) 		0.9
(1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181626_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5650
Sequence Type Exemplar sequence
Representative Public ID ZK546.7 NCBI
Target Description ZK546.7 /REP_DB=WormBase Gene ID /WP=CE02921 /TR=Q23518 /GB=AAA68740.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062499(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062499 NCBI Caenorhabditis elegans ZK546.7 (ZK546.7) mRNA, complete cds. 11/11 None
SNAP00000034942 ENSEMBL cdna:SNAP chromosome:CEL140:II:4930964:4932099:1 11/11 None
GENEFINDER00000034958 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4930964:4932099:1 11/11 None
ZK546.7 ENSEMBL cdna:known chromosome:CEL140:II:4930964:4932099:1 gene:ZK546.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4930961-4932097(+) 95.87 100.0
chrIV:5218931-5220124(+) 87.42 91.55
chrIV:5226990-5228183(+) 87.42 91.55
Public Domain and Genome References
Gene Title
Ensembl ZK546.7
Entrez Gene 191345 Entrez gene
SwissProt Q23518 EMBL-EBI
WormBase CE02921 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68740 Hypothetical protein ZK546.7 [Caenorhabditis elegans] ref|NP_494900.1| ZK546.7 [Caenorhabditis elegans] 0.0
blast AAF60821 Hypothetical protein Y59E9AL.3 [Caenorhabditis elegans] gb|AAF60820.1| Hypothetical protein Y59E9AL.2 [Caenorhabditis elegans] ref|NP_001023536.1| Y59E9AL.2 [Caenorhabditis elegans] ref|NP_001023537.1| Y59E9AL.3 [Caenorhabditis elegans] 0.0
blast CAE64292 Hypothetical protein CBG08965 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181626_AT
ccaccatactgcgagtgtgagaactgtccgaagcttccgccaccaccaccaatcccacca
ccgggcccaccaccaccacgtgtcatgcacgacgaatggatcgacatccgcgagggagat
ccatggccaactcgcaagcttgttaaagctttggacaaatccttggacacccttccagga
gtcagtgcagatcagtatgttgccttgtggtacatgcagggtgaacctgtcatgggtcgt
gtttggaatgagggaggaaaggttgccgccaacttctcttggttcaacaatgaatattgc
aagaacgttggctccattcagttgctcgtccgtctcggaccacacgtcgttggatacgaa
tatggttggattccattcccagaagctgcaaacttcgacgctggaaagatctggaagcca
gtgcacgtcaacaaccacaagggagatatttctgttggagtggttaaccttccaggcgga
aagcagatccttgccaaggtcgatgttcgcaacgagtcgtacggatacggttatcaagga
aaggagcactcggctcgtggacctgcttgtgcttcgagtgtcactgttctttgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCATACTGCGAGTGTGAGAACT 509 273 424 Antisense
TGTGAGAACTGTCCGAAGCTTCCGC 202 555 439 Antisense
GACGAATGGATCGACATCCGCGAGG 401 377 514 Antisense
CGACATCCGCGAGGGAGATCCATGG 637 251 525 Antisense
ATGGCCAACTCGCAAGCTTGTTAAA 286 53 546 Antisense
TCCAGGAGTCAGTGCAGATCAGTAT 330 587 597 Antisense
AGAACGTTGGCTCCATTCAGTTGCT 587 71 725 Antisense
CGAATATGGTTGGATTCCATTCCCA 120 253 780 Antisense
GAAGCTGCAAACTTCGACGCTGGAA 570 343 805 Antisense
GCTTGTGCTTCGAGTGTCACTGTTC 449 307 988 Antisense
CTTCGAGTGTCACTGTTCTTTGCCG 10 221 995 Antisense
Sequence Source Affymetrix Proprietary Database