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[181625_s_at]

Description W09C3.7 /REP_DB=WormBase Gene ID /WP=CE14756 /TR=P91532 /GB=AAC24415.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 2.7
(-3)
A 		7.6
(-2.6)
A 		4.3
(-2.9)
A 		83.5
(3)
A 		81
B 4.7
(-3)
A 		9.6
(-2.5)
A 		7.6
(-2.7)
A 		60.2
(3)
A 		56
C 4.6
(-3)
A 		5.6
(-3)
A 		9
(-2.8)
A 		127.8
(3)
A 		123
avr 4
(-3) 		7.6
(-2.8) 		7
(-2.8) 		90.5
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 477
1 2 3 4 5 6 range
A 11.8
(-2.9)
A 		5.9
(-3)
A 		8
(-3)
A 		51.5
(-2.4)
A 		311.8
(1)
P 		466.9
(3)
P 		461
B 4
(-3)
A 		5.4
(-3)
A 		6.3
(-3)
A 		67.7
(-2)
A 		374.4
(2.7)
P 		394
(3)
P 		390
C 30.5
(-2.8)
A 		26.9
(-2.9)
A 		17.9
(-3)
A 		38.1
(-2.7)
A 		379.7
(1.7)
P 		480.8
(3)
P 		463
avr 15.4
(-2.9) 		12.7
(-3) 		10.7
(-3) 		52.4
(-2.4) 		355.3
(1.7) 		447.2
(3) 		437
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 1
(-3)
A 		1.7
(-2.6)
A 		1.1
(-2.9)
A 		12.2
(3)
A 		11
B 1.5
(-3)
A 		2.4
(-2.5)
A 		1.8
(-2.8)
A 		12.8
(3)
A 		11
C 1.5
(-3)
A 		1.6
(-3)
A 		3.1
(-2.5)
A 		21.5
(3)
A 		20
avr 1.3
(-3) 		1.9
(-2.7) 		2
(-2.7) 		15.5
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 2.2
(-3)
A 		2.1
(-3)
A 		1.7
(-3)
A 		13.1
(-2.4)
A 		94.1
(2)
P 		113.7
(3)
P 		112
B 1.4
(-3)
A 		1.8
(-3)
A 		1.5
(-3)
A 		17.9
(-2.3)
A 		152.1
(3)
P 		146.9
(2.8)
P 		151
C 11.3
(-2.7)
A 		8.2
(-2.9)
A 		4.6
(-3)
A 		7.7
(-2.9)
A 		122.9
(1.5)
P 		161
(3)
P 		156
avr 5
(-2.9) 		4
(-2.9) 		2.6
(-3) 		12.9
(-2.6) 		123
(2.2) 		140.5
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181625_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2030
Sequence Type Exemplar sequence
Representative Public ID W09C3.7 NCBI
Target Description W09C3.7 /REP_DB=WormBase Gene ID /WP=CE14756 /TR=P91532 /GB=AAC24415.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059030 NCBI Caenorhabditis elegans W09C3.7 (W09C3.7) mRNA, complete cds. 11/11 None
SNAP00000028188 ENSEMBL cdna:SNAP chromosome:CEL140:I:4714383:4715162:-1 10/11 None
GENEFINDER00000028194 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4714383:4715162:-1 11/11 None
W09C3.7 ENSEMBL cdna:known chromosome:CEL140:I:4714354:4715162:-1 gene:W09C3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4714382-4715162(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09C3.7
Entrez Gene 172083 Entrez gene
SwissProt P91532 EMBL-EBI
WormBase CE14756 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24415 Hypothetical protein W09C3.7 [Caenorhabditis elegans] ref|NP_491431.1| W09C3.7 [Caenorhabditis elegans] 1.0E-86
blast AAC24415 Hypothetical protein W09C3.7 [Caenorhabditis elegans] ref|NP_491431.1| W09C3.7 [Caenorhabditis elegans] 5.0E-81
blast CAE60282 Hypothetical protein CBG03865 [Caenorhabditis briggsae] 1.0E-41
blast CAE60282 Hypothetical protein CBG03865 [Caenorhabditis briggsae] 2.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000028188 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:181625_S_AT
tttctggactttcgtgttcattgcctcagtggcattttgtcattcgtgtgaaagggaggc
tgataccagtaatctgatcccggtgaccgcggagccacgtgacgctgctcgtgatgctgc
agacttggaattggcaaagacagtcgccacaaagttggccgccgatacaatgcacgtgag
aaccagtgaagatatccatgatctcaccaactggcttctgccacacatgatcttcaacat
gtgcggtaatcgtttgtacaagggtcaatttgttgcattcaacatgcatgctcttattga
aaaagagaaattcccaactgatctgacatatgaagtgattcaagcatacactcgtgagga
taacctttcaatgcatgttaaagcaaacggattcgttttcgaagagaatgatgagcttat
tatggatttcaagaagcaagaggatggatcatataagatgtcacagggaactattctcac
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTGGACTTTCGTGTTCATTGCC 542 671 21 Antisense
GCCTCAGTGGCATTTTGTCATTCGT 507 281 43 Antisense
TACCAGTAATCTGATCCCGGTGACC 417 649 84 Antisense
GCTCGTGATGCTGCAGACTTGGAAT 564 299 127 Antisense
AGTCGCCACAAAGTTGGCCGCCGAT 327 61 162 Antisense
GCCGCCGATACAATGCACGTGAGAA 707 285 178 Antisense
TGAAGATATCCATGATCTCACCAAC 445 575 207 Antisense
CTTCTGCCACACATGATCTTCAACA 192 221 235 Antisense
GAAATTCCCAACTGATCTGACATAT 170 363 327 Antisense
GTGATTCAAGCATACACTCGTGAGG 435 485 355 Antisense
GATGTCACAGGGAACTATTCTCACC 654 409 477 Antisense
Sequence Source Affymetrix Proprietary Database