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[181624_at]

Description F46B6.10 /REP_DB=WormBase Gene ID /WP=CE05876 /TR=Q20451 /GB=CAA94826.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 3.9
(-3)
A 		24
(0.3)
A 		40.6
(3)
A 		34.8
(2.1)
A 		37
B 2
(-3)
A 		46.3
(3)
A 		1.9
(-3)
A 		4.5
(-2.6)
A 		44
C 22.3
(-0.1)
A 		4.7
(-2.6)
A 		1.5
(-3)
A 		44.2
(3)
A 		43
avr 9.4
(-3) 		25
(2.1) 		14.7
(-1.3) 		27.8
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 7.6
(-2.5)
A 		4.4
(-3)
A 		5.7
(-2.8)
A 		12.7
(-1.8)
A 		44.7
(3)
A 		21.3
(-0.5)
A 		40
B 6.4
(3)
A 		1.5
(-2.3)
A 		2.2
(-1.5)
A 		0.8
(-3)
A 		3.8
(0.2)
A 		2.6
(-1.1)
A 		6
C 5.5
(-1.8)
A 		16.4
(3)
A 		2.7
(-3)
A 		3.4
(-2.7)
A 		12.4
(1.2)
A 		3.7
(-2.6)
A 		14
avr 6.5
(-1.9) 		7.4
(-1.6) 		3.5
(-3) 		5.6
(-2.3) 		20.3
(3) 		9.2
(-1) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.4
(-3)
A 		5.2
(-0.5)
A 		10.6
(3)
A 		5.1
(-0.6)
A 		9
B 0.7
(-2.8)
A 		11.4
(3)
A 		0.4
(-3)
A 		1
(-2.7)
A 		11
C 7.4
(3)
A 		1.3
(-2.3)
A 		0.5
(-3)
A 		7.4
(3)
A 		7
avr 3.2
(-3) 		6
(3) 		3.8
(-1.7) 		4.5
(-0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.4
(-2.9)
A 		1.6
(-2.8)
A 		1.2
(-3)
A 		3.2
(-2)
A 		13.5
(3)
A 		5.2
(-1)
A 		12
B 2.2
(3)
A 		0.5
(-2.1)
A 		0.5
(-2.1)
A 		0.2
(-3)
A 		1.5
(0.9)
A 		1
(-0.6)
A 		2
C 2
(-1.2)
A 		5
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		4
(1.6)
A 		1.2
(-2.3)
A 		4
avr 1.9
(-1.8) 		2.4
(-1.3) 		0.8
(-3) 		1.4
(-2.3) 		6.3
(3) 		2.5
(-1.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181624_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12119
Sequence Type Exemplar sequence
Representative Public ID F46B6.10 NCBI
Target Description F46B6.10 /REP_DB=WormBase Gene ID /WP=CE05876 /TR=Q20451 /GB=CAA94826.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073128(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073128 NCBI Caenorhabditis elegans F46B6.10 (F46B6.10) mRNA, complete cds. 11/11 None
SNAP00000041204 ENSEMBL cdna:SNAP chromosome:CEL140:V:9804045:9804610:-1 11/11 None
F46B6.10 ENSEMBL cdna:known chromosome:CEL140:V:9804045:9804610:-1 gene:F46B6.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041214 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9804044-9804610(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46B6.10
Entrez Gene 185841 Entrez gene
SwissProt Q20451 EMBL-EBI
WormBase CE05876 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94826 Hypothetical protein F46B6.10 [Caenorhabditis elegans] ref|NP_505529.1| F46B6.10 [Caenorhabditis elegans] 2.0E-56
blast CAE74537 Hypothetical protein CBG22294 [Caenorhabditis briggsae] 4.0E-33
blast AAF60644 Hypothetical protein Y47D9A.4 [Caenorhabditis elegans] ref|NP_491345.2| Y47D9A.4 [Caenorhabditis elegans] 8.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505529.1 1 4-23
F46B6.10 1 4-23
SNAP00000041204 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:181624_AT
aattgttatttcgatgctttttgcaatatcatgtaatagctttctcgttttttgtgcaaa
attgaagaaggacaagaaggctactttagaggaagtcactccacggggaaccacaccgct
accgcaatgttcaagacaatcgaggattgttgacagggatgacagaggttcaacaaaaac
gaaaggaggtcggagaggagtcaaaagcagtaaagaaccagattccacggatgatgcttt
caaagaaatggcaaagcgtttagcgaagaaggataaacctgagaaaactggagattcaat
tgttggagatgacgacgaaaaccctcttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGTTATTTCGATGCTTTTTGCA 362 179 24 Antisense
GCAATATCATGTAATAGCTTTCTCG 176 323 46 Antisense
TAATAGCTTTCTCGTTTTTTGTGCA 289 635 57 Antisense
GGACAAGAAGGCTACTTTAGAGGAA 260 525 93 Antisense
TAGAGGAAGTCACTCCACGGGGAAC 333 651 110 Antisense
ACCGCTACCGCAATGTTCAAGACAA 130 89 138 Antisense
ATCGAGGATTGTTGACAGGGATGAC 186 25 162 Antisense
GAACCAGATTCCACGGATGATGCTT 504 345 238 Antisense
GATTCCACGGATGATGCTTTCAAAG 635 433 244 Antisense
ATGGCAAAGCGTTTAGCGAAGAAGG 183 53 271 Antisense
AGATGACGACGAAAACCCTCTTGCA 533 67 330 Antisense
Sequence Source Affymetrix Proprietary Database