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[181622_at]

Description C10E2.5 /REP_DB=WormBase Gene ID /WP=CE08064 /TR=O17326 /GB=AAB71240.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 30.5
(2.2)
A 		33.1
(2.7)
A 		34.8
(3)
A 		2.9
(-3)
A 		32
B 34.7
(2.3)
A 		7.8
(-3)
A 		12.9
(-2)
A 		38
(3)
A 		30
C 36.4
(1.4)
A 		19.1
(-1.1)
A 		6
(-3)
A 		47.8
(3)
A 		42
avr 33.9
(3) 		20
(-2.2) 		17.9
(-3) 		29.6
(1.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 26.3
(0.8)
A 		37.4
(3)
A 		24.1
(0.3)
A 		19.1
(-0.7)
A 		7.5
(-3)
A 		16.1
(-1.3)
A 		30
B 32.5
(1.3)
A 		2.6
(-3)
A 		7.7
(-2.3)
A 		44.4
(3)
A 		6.9
(-2.4)
A 		10.9
(-1.8)
A 		42
C 17.2
(0)
A 		30.1
(3)
A 		11.7
(-1.3)
A 		30.1
(3)
A 		4.2
(-3)
A 		25.7
(2)
A 		26
avr 25.3
(1.6) 		23.4
(1.1) 		14.5
(-1) 		31.2
(3) 		6.2
(-3) 		17.6
(-0.3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.1
(3)
A 		7.2
(0.8)
A 		9.1
(1.9)
A 		0.4
(-3)
A 		11
B 11.1
(3)
A 		1.9
(-3)
A 		3
(-2.3)
A 		8.1
(1)
A 		9
C 12
(3)
A 		5.5
(-0.9)
A 		2.1
(-3)
A 		8.1
(0.6)
A 		10
avr 11.4
(3) 		4.9
(-2.8) 		4.7
(-3) 		5.5
(-2.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.8
(-1.6)
A 		13.3
(3)
A 		5.3
(-1.4)
A 		4.8
(-1.6)
A 		2.3
(-3)
A 		3.9
(-2.1)
A 		11
B 11.3
(2.7)
A 		0.9
(-3)
A 		1.9
(-2.4)
A 		11.8
(3)
A 		2.8
(-2)
A 		4.1
(-1.2)
A 		11
C 6.4
(0.8)
A 		9.2
(3)
A 		3
(-1.8)
A 		6.1
(0.6)
A 		1.4
(-3)
A 		8.6
(2.5)
A 		8
avr 7.5
(2.7) 		7.8
(3) 		3.4
(-1.7) 		7.6
(2.8) 		2.2
(-3) 		5.5
(0.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181622_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17612
Sequence Type Exemplar sequence
Representative Public ID C10E2.5 NCBI
Target Description C10E2.5 /REP_DB=WormBase Gene ID /WP=CE08064 /TR=O17326 /GB=AAB71240.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078302
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000026951 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16749668:16762851:-1 None
C10E2.5 ENSEMBL cdna:known chromosome:CEL140:X:16751777:16753586:-1 gene:C10E2.5 None
NM_078302 NCBI Caenorhabditis elegans C10E2.5 (C10E2.5) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16751828-16753587(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10E2.5
Entrez Gene 182499 Entrez gene
SwissProt O17326 EMBL-EBI
WormBase CE35394 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71244 Hypothetical protein C10E2.4 [Caenorhabditis elegans] ref|NP_510702.1| C10E2.4 [Caenorhabditis elegans] 1.0E-77
blast CAE69943 Hypothetical protein CBG16326 [Caenorhabditis briggsae] 9.0E-72
blast AAB71240 Hypothetical protein C10E2.5 [Caenorhabditis elegans] ref|NP_510703.2| C10E2.5 [Caenorhabditis elegans] 1.0E-49
blast AAB71240 Hypothetical protein C10E2.5 [Caenorhabditis elegans] ref|NP_510703.2| C10E2.5 [Caenorhabditis elegans] 1.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510703.2 2 29-51,56-78
C10E2.5 2 29-51,56-78
GENEFINDER00000026951 3 241-258,369-391,396-418
Sequence
Target Sequence 
>C. ELEGANS:181622_AT
gtctcgccatcgtttatgtttttttcacacattcttgatttttgtttaccttcctaaacc
catcatattattctccattggaacattcttggatcgagtattaatgcggcgtctcttgcg
ttgtttcttcattcttattgccgtcgttaatctgggcatttttctagtcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCGCCATCGTTTATGTTTTTTT 575 469 24 Antisense
TGTTTTTTTCACACATTCTTGATTT 381 561 40 Antisense
ACACATTCTTGATTTTTGTTTACCT 295 109 50 Antisense
TTGTTTACCTTCCTAAACCCATCAT 323 677 65 Antisense
CCTAAACCCATCATATTATTCTCCA 229 269 76 Antisense
TATTCTCCATTGGAACATTCTTGGA 131 665 92 Antisense
GGAACATTCTTGGATCGAGTATTAA 455 529 103 Antisense
AGTATTAATGCGGCGTCTCTTGCGT 145 63 120 Antisense
CTTCATTCTTATTGCCGTCGTTAAT 380 221 150 Antisense
CCGTCGTTAATCTGGGCATTTTTCT 92 115 164 Antisense
AATCTGGGCATTTTTCTAGTCGAAA 209 169 172 Antisense
Sequence Source Affymetrix Proprietary Database