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[181621_at]

Description T24H10.4 /REP_DB=WormBase Gene ID /WP=CE03729 /TR=Q22750 /GB=CAA90944.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 87      6grp_total > 59      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 734
1 2 3 4 range
A 948.5
(-2.3)
P 		951.9
(-2.2)
P 		906.8
(-3)
P 		1243
(3)
P 		336
B 1001
(-2)
P 		874.9
(-3)
P 		930.2
(-2.5)
P 		1609
(3)
P 		734
C 987.4
(-2.2)
P 		931.5
(-2.7)
P 		904.8
(-3)
P 		1513
(3)
P 		608
avr 979
(-2.3) 		919.4
(-2.9) 		913.9
(-3) 		1455
(3) 		541

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 851
1 2 3 4 5 6 range
A 1754.1
(3)
P 		1122.3
(-1.5)
P 		929.7
(-2.9)
P 		918.8
(-3)
P 		1253.3
(-0.6)
P 		1718.3
(2.7)
P 		835
B 1454.3
(1.9)
P 		1102.3
(-1.4)
P 		926.8
(-3)
P 		934.9
(-2.9)
P 		1205.4
(-0.4)
P 		1567.2
(3)
P 		640
C 1283.1
(-0.7)
P 		1060.4
(-2.3)
P 		1045.8
(-2.4)
P 		970.7
(-3)
P 		1121.4
(-1.9)
P 		1769.8
(3)
P 		799
avr 1497.2
(1.5) 		1095
(-1.8) 		967.4
(-2.8) 		941.5
(-3) 		1193.4
(-1) 		1685.1
(3) 		744
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 345.3
(3)
P 		206.6
(-2.1)
P 		237.1
(-1)
P 		182
(-3)
P 		163
B 319.2
(1.9)
P 		216.1
(-3)
P 		215.6
(-3)
P 		342.9
(3)
P 		127
C 326.8
(3)
P 		267.8
(-1.9)
P 		315.3
(2)
P 		255.1
(-3)
P 		72
avr 330.4
(3) 		230.2
(-3) 		256
(-1.5) 		260
(-1.2) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 397
1 2 3 4 5 6 range
A 323.4
(0.4)
P 		399.1
(2.5)
P 		202.5
(-3)
P 		233
(-2.2)
P 		378.2
(1.9)
P 		418.4
(3)
P 		216
B 506
(1.7)
P 		366.9
(-0.6)
P 		225
(-3)
P 		247.6
(-2.6)
P 		489.7
(1.4)
P 		584.4
(3)
P 		359
C 475.6
(1.2)
P 		323.5
(-1.1)
P 		266.2
(-1.9)
P 		195.2
(-3)
P 		362.9
(-0.5)
P 		592.5
(3)
P 		397
avr 435
(1.1) 		363.2
(-0.3) 		231.2
(-2.9) 		225.3
(-3) 		410.3
(0.6) 		531.8
(3) 		307
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181621_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3935
Sequence Type Exemplar sequence
Representative Public ID T24H10.4 NCBI
Target Description T24H10.4 /REP_DB=WormBase Gene ID /WP=CE03729 /TR=Q22750 /GB=CAA90944.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063544(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063544 NCBI Caenorhabditis elegans T24H10.4 (T24H10.4) mRNA, complete cds. 11/11 None
SNAP00000021892 ENSEMBL cdna:SNAP chromosome:CEL140:II:9109707:9110957:1 11/11 None
GENEFINDER00000021902 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9109485:9110957:1 11/11 None
T24H10.4 ENSEMBL cdna:known chromosome:CEL140:II:9109485:9111123:1 gene:T24H10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9109481-9110954(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24H10.4
Entrez Gene 188870 Entrez gene
SwissProt Q22750 EMBL-EBI
WormBase CE35030 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90944 Hypothetical protein T24H10.4 [Caenorhabditis elegans] ref|NP_495945.2| T24H10.4 [Caenorhabditis elegans] 0.0
blast CAE59804 Hypothetical protein CBG03266 [Caenorhabditis briggsae] 1.0E-171
blast CAE59804 Hypothetical protein CBG03266 [Caenorhabditis briggsae] 1.0E-162
blast XP_788598 PREDICTED: similar to CG8245-PA [Strongylocentrotus purpuratus] 3.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR008547 EMBL-EBI Eukaryotic protein of unknown function DUF829 1.6E-116
Pfam IPR008547 EMBL-EBI Eukaryotic protein of unknown function DUF829 1.6E-116
Sequence
Target Sequence 
>C. ELEGANS:181621_AT
acaatctacttccacgtattctctatgaatggatgctctttgctcgcagcatactgggat
caattacaagatctcgagaatggaaaagaagttctttcaaaatccagaggacttatcttc
gatagttgtccagcattcactagtccatctcaaagtgcacaggctatctcgtttgccaca
cttccaccgagtcattaccacggagcattgagaggatcatatcgagcagttctttataca
ttcttctcatttcatagaggagttttgtggttgagatcattcttggagaaggatatctac
gagagacactatgcgtatttcaaaatgataacatttgacaatctaccggcgaagcagctc
tatatttatggacctgcagacttagtttgctccgaagaatccatcgaagaatacgcccag
ttaatggagcaacgtggtgtttcaatctcaaaacttcgtcttctcgattctttgcactgc
caacatctccgatctcatcccgtgacgtacactcaagaatgcctagactttgtgaaatca
ggccatctaccagcgaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATCTACTTCCACGTATTCTCTA 327 115 403 Antisense
TGAATGGATGCTCTTTGCTCGCAGC 339 575 428 Antisense
AGCATTCACTAGTCCATCTCAAAGT 459 77 534 Antisense
AGTGCACAGGCTATCTCGTTTGCCA 131 61 556 Antisense
ACTTCCACCGAGTCATTACCACGGA 604 101 582 Antisense
AATCTACCGGCGAAGCAGCTCTATA 100 169 742 Antisense
GGACCTGCAGACTTAGTTTGCTCCG 586 523 772 Antisense
AAAACTTCGTCTTCTCGATTCTTTG 135 131 852 Antisense
TCGATTCTTTGCACTGCCAACATCT 612 603 866 Antisense
CTCATCCCGTGACGTACACTCAAGA 461 229 896 Antisense
AAATCAGGCCATCTACCAGCGAATA 583 117 937 Antisense
Sequence Source Affymetrix Proprietary Database